View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_21 (Length: 607)
Name: NF3918_low_21
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 15 - 580
Target Start/End: Complemental strand, 27643624 - 27643059
Alignment:
| Q |
15 |
tcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaaataca |
114 |
Q |
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| T |
27643624 |
tcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaaataca |
27643525 |
T |
|
| Q |
115 |
cttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattg |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
27643524 |
cttgggagcatttctgtgatatgacggatgcgggcgtgcttgcaaaacaacatgtgtgggctgcagttacagaagatgcgaagaaccaagctttcaattg |
27643425 |
T |
|
| Q |
215 |
cacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgat |
314 |
Q |
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| T |
27643424 |
cacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttaatgttaagtttgtggagttgaatgacaaggaagagtttgat |
27643325 |
T |
|
| Q |
315 |
ttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaag |
414 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643324 |
ttggtggagttaatgcgtgataagggtgagatttgggacctgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaag |
27643225 |
T |
|
| Q |
415 |
caacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtat |
514 |
Q |
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| T |
27643224 |
caacggtgccagttctgcggtttcagtttcaacatgtatctagtatgaacaaaagtaaggattatgggttctttgagtatgcagatacgtttaagagtat |
27643125 |
T |
|
| Q |
515 |
cagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcatt |
580 |
Q |
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| T |
27643124 |
cagattctgggtggctaagttgagggagatgaaactcatacccgtctacaaacattgaattgcatt |
27643059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 57 - 567
Target Start/End: Original strand, 50247309 - 50247819
Alignment:
| Q |
57 |
tatgctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttg |
156 |
Q |
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| T |
50247309 |
tatgctgcgatatgtcgccatgtagggttaccgtttcggtatccaggaaatagatacacttgggagcatttttgtgatatgtcagatgcaggtgtgctgg |
50247408 |
T |
|
| Q |
157 |
caaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgtt |
256 |
Q |
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| T |
50247409 |
caaagcaacatgtgtgggctggagttacaaagaaagctaagaaccaagcatttaattgtacaaacggtgacattttcacttggaagagtatgtggatgtt |
50247508 |
T |
|
| Q |
257 |
gcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttg |
356 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||| |||| || |||||||||||| | ||||| |||||||| ||||||||| ||||||||||| |
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| T |
50247509 |
gcttagtgaggtttttgatgttgagtttgttgagttggatgataaagaagagtttgatatcattgagttgatgcgtgacaagggtgaggtttgggacttg |
50247608 |
T |
|
| Q |
357 |
attgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatcta |
456 |
Q |
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||||| ||| |||||||||||||||||||||| ||| |||||||||||| ||||||||| | ||||| || | ||||||||||||||||||||||||| |
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| T |
50247609 |
attgtagagaaatatgggcttcataagaccaagttgaaggaaattgcttgctttgaagccatggtgccagttgtacggtttgagtttcaacatgtatcta |
50247708 |
T |
|
| Q |
457 |
gtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatc |
556 |
Q |
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|||||||||||||||| | |||||||| || |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| | |
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| T |
50247709 |
gtatgaacaagagtaaagattatgggtttttagagtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagggagatgaaacttatacc |
50247808 |
T |
|
| Q |
557 |
cttctaccaac |
567 |
Q |
| |
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|| |||||||| |
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| T |
50247809 |
ctcctaccaac |
50247819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 60 - 573
Target Start/End: Original strand, 50254449 - 50254962
Alignment:
| Q |
60 |
gctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaa |
159 |
Q |
| |
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||||||||||||| ||| |||| ||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||| |||| |
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| T |
50254449 |
gctgccatatgtcgccaggtaggattaccgtttcgttttccaggaaataggtacacttgggagcatttctgtgatatgacggatgctcgtgtgctggcaa |
50254548 |
T |
|
| Q |
160 |
aacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgct |
259 |
Q |
| |
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| |||||||| ||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||| | |||| |
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| T |
50254549 |
agcaacatgtatgggctgcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtggaaggtgct |
50254648 |
T |
|
| Q |
260 |
tagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgatt |
359 |
Q |
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| || || ||||| ||||||||||||||| ||| |||| ||||||||||||||||||| | |||| |||||||||||||||||| ||||||| |||| |
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| T |
50254649 |
ttgtaagacttttgctgttaagtttgtggatttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagatt |
50254748 |
T |
|
| Q |
360 |
gtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagta |
459 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||||| || | || ||||||||||||| ||||||||||| |
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| T |
50254749 |
gtggaggagtatggacttcataagaccaaattggaggaaattgcttgttttgatgccttggtgccagtttttcgatttgagtttcaacttgtatctagta |
50254848 |
T |
|
| Q |
460 |
tgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatcctt |
559 |
Q |
| |
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|||| |||||||| || |||| ||| ||||||||||| || |||||||| ||| | | |||||||||| ||||||||||||||||| |||||| || | |
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| T |
50254849 |
tgaataagagtaaaaattatgagttttttgagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccat |
50254948 |
T |
|
| Q |
560 |
ctaccaacgttgaa |
573 |
Q |
| |
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|||| ||| ||||| |
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| T |
50254949 |
ctacgaacattgaa |
50254962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 517 - 602
Target Start/End: Complemental strand, 27646328 - 27646243
Alignment:
| Q |
517 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattcttcgac |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgac |
27646243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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