View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_210 (Length: 235)
Name: NF3918_low_210
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_210 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45138377 - 45138156
Alignment:
| Q |
1 |
agaccatcatcctcctaacacactaaattgcataataca-atcaatgtcccactaacatccaaatgctaccaaaagcctcacaatccataaataagtgat |
99 |
Q |
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| T |
45138377 |
agaccatcatcctcctaacacactaaattgcataatacacatcaatgtcgcactaacatccaaatgctaccaaaagcctcacaatccataaataagtgat |
45138278 |
T |
|
| Q |
100 |
ccatattctcctcacaaaatttaatttaccacaaaatctcatctcataatttaaaataatttatgatattcttttgaaatgataaatttattaatcagaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45138277 |
ccatattctcctcacaaaatttaatttaccacaaaatctcatctcataatttaaaataatttatgatattcttttgaaatgacaaatttattaatcagaa |
45138178 |
T |
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| Q |
200 |
aacaggaaaagataccaaaaac |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
45138177 |
aacaggaaaagataccaaaaac |
45138156 |
T |
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