View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_221 (Length: 226)
Name: NF3918_low_221
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_221 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 24241456 - 24241230
Alignment:
| Q |
1 |
aatctcctcaatgacaatgtaatgcaaccaagagaatgattctgattattgnnnnnnn-tggaaaaatgtatacaacttatgaatgttctctatcaatat |
99 |
Q |
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| T |
24241456 |
aatctcctcaatgacaatgtaatgcaaccaagagaatgattctaattattgaaaaaaaatggaaaaatgtatacaacttatgaatgttctctatcaatat |
24241357 |
T |
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| Q |
100 |
ctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtggcccttcgaaatgtgacaagtatcattctgacgacactcc |
199 |
Q |
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| T |
24241356 |
ctagtcacaccaaagtttatcacactcttaacattttccaaaaacgcggagatggaggtggccttccgaaatgtgacaaatatcattctgacgacactct |
24241257 |
T |
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| Q |
200 |
aatggttgcactttttataggatggtt |
226 |
Q |
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| T |
24241256 |
aatagttgcacttttcataggatggtt |
24241230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 29111230 - 29111036
Alignment:
| Q |
21 |
aatgcaaccaagagaatgattctgattattgnnnnnnntggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatc |
120 |
Q |
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| T |
29111230 |
aatgcaatcaagagaatgattctgattgttgcgtacaa-ggaaaaatgtacacaacttatgtatgttcaccatcagtgtccactcacaccaaagcatatc |
29111132 |
T |
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| Q |
121 |
atactcttaacattttccaaaaacgcggagatggaggtggcccttcgaaatgtgaca---agtatcattctgacgacactccaatggttgcacttt |
213 |
Q |
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| T |
29111131 |
tcactcttaatagttttcaaaagggtggagatggaggtggtccttcagaatgtgacaagcagtatcattctgatgacactcctgttgttgcacttt |
29111036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 29058414 - 29058311
Alignment:
| Q |
126 |
cttaacattttccaaaaacgcggagatggaggtggcccttcgaaatgtgaca---agtatcattctgacgacactccaatggttgcactttttataggat |
222 |
Q |
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||||||| ||| |||||| | |||||||||||||||||||| |||||| | ||||||||||||| ||||||||| | |||||||||| | ||||| |
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| T |
29058414 |
cttaacagttttcaaaaaggtggagatggaggtggcccttcagcatgtgataatcagtatcattctgatgacactccagtcgttgcactttccacaggat |
29058315 |
T |
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| Q |
223 |
ggtt |
226 |
Q |
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|||| |
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| T |
29058314 |
ggtt |
29058311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 28956668 - 28956822
Alignment:
| Q |
62 |
aaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtggc |
161 |
Q |
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||||||||| ||||||||||||||||||| | || | |||| | ||||||| | |||| |||||||| | ||| ||||| | || |||||||||||| |
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| T |
28956668 |
aaaaatgtacacaacttatgaatgttctccagcagtgtctacttacaccaaggcatatctcactcttaatagttttcaaaatggtggtgatggaggtggc |
28956767 |
T |
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| Q |
162 |
ccttcgaaatgtgaca---agtatcattctgacgacactccaatggttgcacttt |
213 |
Q |
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| T |
28956768 |
ccttcagaatgtgataatcaataccattctgatgacactccagttgttgcacttt |
28956822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 29069246 - 29069104
Alignment:
| Q |
60 |
ggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtg |
159 |
Q |
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||||||||||| ||||| |||| |||||||| |||| | |||| |||||| |||| |||| |||||||| | ||| |||| | ||||||||||||| |
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| T |
29069246 |
ggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggaggtg |
29069147 |
T |
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| Q |
160 |
gcccttcgaaatgtgaca---agtatcattctgacgacactcc |
199 |
Q |
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| T |
29069146 |
gtccttcagaatgtgacaagcagtatcattccgatgacactcc |
29069104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 11854178 - 11854320
Alignment:
| Q |
60 |
ggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtg |
159 |
Q |
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||||||||||| ||||| |||| |||||||| |||| | |||| |||||| |||| |||| |||||||| | ||| |||| | ||||||||||||| |
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| T |
11854178 |
ggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggaggtg |
11854277 |
T |
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| Q |
160 |
gcccttcgaaatgtgaca---agtatcattctgacgacactcc |
199 |
Q |
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| T |
11854278 |
gtccttcagaatgtgacaagcagtatcattccgatgacactcc |
11854320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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