View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_225 (Length: 224)
Name: NF3918_low_225
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_225 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 17455544 - 17455390
Alignment:
| Q |
1 |
aatatttaccattgtaacaatggcactgactgtccccatattcttgtcatttgaattgcatgcactcttcaaaataattaagctttctgtatcagtatgg |
100 |
Q |
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| T |
17455544 |
aatatttaccattgtaacaatggcactgactgtccccatattcttgtcatttgaattgcatgcactcttcaaaataattaagctttctgtatcagtatgg |
17455445 |
T |
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| Q |
101 |
aatggaggaagttttctgttggacacggcgaaaaataaatcagagatgaaatctg |
155 |
Q |
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| T |
17455444 |
aatggaggaagttttctgttggacacggcgaaaaataaatcagagatgaaatctg |
17455390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 17461481 - 17461602
Alignment:
| Q |
2 |
atatttaccattgtaacaatggcactgactgtccccatattcttgtcatttgaattgcatgcactcttcaaaataattaagctttctgtatcagtatgga |
101 |
Q |
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| T |
17461481 |
atatttaccattgcaaccatggcactgactgtccccatattcttctcatataaattgcatgctttcttccaaataattaagcttgctgtatcagtatgga |
17461580 |
T |
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| Q |
102 |
atggaggaagttttctgttgga |
123 |
Q |
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| T |
17461581 |
acgaaggaagttttctgttgga |
17461602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 17455239 - 17455183
Alignment:
| Q |
150 |
aatctgcccaaggttacatggactgatgaccaagatcaagtgatggagagttcaaca |
206 |
Q |
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| T |
17455239 |
aatctgcccaaggttacatggactgatgaccaagatcaagtgatggagagttcaaca |
17455183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 52142914 - 52143035
Alignment:
| Q |
2 |
atatttaccattgtaacaatggcactgactgtccccatattcttgtcatttgaattgcatgcactcttcaaaataattaagctttctgtatcagtatgga |
101 |
Q |
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||||||||||||| ||| ||||||||| |||||||||||||| |||||| ||||||||||| | ||||| ||||| ||||| |||||| |||||||||| |
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| T |
52142914 |
atatttaccattgcaaccatggcactggctgtccccatattcctgtcatatgaattgcatgtaatcttccaaatacttaaggtttctgcttcagtatgga |
52143013 |
T |
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| Q |
102 |
atggaggaagttttctgttgga |
123 |
Q |
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| || |||||||| |||||||| |
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| T |
52143014 |
acggtggaagtttcctgttgga |
52143035 |
T |
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