View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_226 (Length: 223)
Name: NF3918_low_226
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_226 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 29041254 - 29041452
Alignment:
| Q |
19 |
acatctattgactgaatatgcaaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggat |
118 |
Q |
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| T |
29041254 |
acatctattgactgaatatgcaaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggat |
29041353 |
T |
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| Q |
119 |
ggtatatggagggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattttatttatgatgatgtc |
217 |
Q |
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| T |
29041354 |
ggtatatggagggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaatgttttctccttattttatttatgatgatgtc |
29041452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 29019561 - 29019743
Alignment:
| Q |
19 |
acatctattgactgaatatgcaaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggat |
118 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||| ||| ||||||||||| ||||||| |||||||| |||||| | |
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| T |
29019561 |
acatctattgactgaatatgcaaagctcatgagatttgaagcaaccatacctgcaggagcagttgaggtttgttctgaaaacttggcatgtccaatgggt |
29019660 |
T |
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| Q |
119 |
ggtatatggagggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattt |
201 |
Q |
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| T |
29019661 |
ggtatatggagggagtttatggttgagtccatggttaagtcaccaagtgatacacttccatgtactatgttttctccttattt |
29019743 |
T |
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