View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_23 (Length: 566)
Name: NF3918_low_23
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Complemental strand, 55869100 - 55868560
Alignment:
| Q |
11 |
cagagagaggattaatatatctttcgtcatcctttcaataagatatgtacgtactgcatcattatacatctcgctaatatctgaattcggttagtgtgtt |
110 |
Q |
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| T |
55869100 |
cagagagaggattaatatatctttcgtcatcctttcaataagatatgtacgtactgcatcattatacatctcgctaatatctgaattcggttagtgtgtt |
55869001 |
T |
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| Q |
111 |
tacaaatgaaaatatagttgcaggaaggttaaaacaaaatcattgttcctcttttcctcccttgattgtttaaacatttgcactagtaagaacacattct |
210 |
Q |
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| T |
55869000 |
tacaaatgaaaatatggttgcaggaaggttaaaacaaaatcattgttcctcttttcctcccttgattgtttaaacatttgcactagtaagaacacattct |
55868901 |
T |
|
| Q |
211 |
tcactgttttgcaaagcctaaaacaagataacgttatcgtttgcctcattggattatctcagaacacagtagcgact-ctggataactaataaaagttac |
309 |
Q |
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| T |
55868900 |
tcactgttttgcaaagcctaaaacaagataacgttattgtttgcctcattggattatctcagaacacagtagcgactcctggataactaataaaagttac |
55868801 |
T |
|
| Q |
310 |
caatttgttgccatgggcttggccttgtgcagcaaatgcagcagggagtgcagtggaggcaggcaagaaactaggttgtgcattcaccaataagagaaga |
409 |
Q |
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| T |
55868800 |
caatttgttgccatgggcttggccttgtgcagcaaatgcagcagggagtgcagtggaggcaggcaagaaactaggttgtgcattcaccaataagagaaga |
55868701 |
T |
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| Q |
410 |
tttcagctgctgctcccctatttcattttgaacaattggcaattattgattatcagtgtaaatggttagaatgtaaatgggggaagcttttgtactaaga |
509 |
Q |
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| T |
55868700 |
tttcagctgctgctcccctatttcattttgaacaattggcaattattgattatcagtgtaaatggttagaatgtaaatgggggaagcttttgtactaaga |
55868601 |
T |
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| Q |
510 |
aacaagttttgtatttctctaatttattagaatataaatggt |
551 |
Q |
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| T |
55868600 |
aacaagttttgta-ttctctaatttattagactataaatggt |
55868560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 31538215 - 31538320
Alignment:
| Q |
290 |
ggataactaataaaagttaccaatttgttgccatgggcttggccttgtgcagcaaatgcagcagggagtgcagtggaggcaggcaagaaactaggttgtg |
389 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| ||| |
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| T |
31538215 |
ggataactaataaagggtaccaatttgttgccatgggcttggccttgtgcagcaaatgccgcagggagtgcagtgggggtaggcaagaaactaggaggtg |
31538314 |
T |
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| Q |
390 |
cattca |
395 |
Q |
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|||||| |
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| T |
31538315 |
cattca |
31538320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 31537739 - 31537856
Alignment:
| Q |
74 |
atacatctcgctaa-tatctgaattcggttagtgtgtttacaaatgaaaatatagttgcaggaaggttaaaacaaaatcattgttcctcttttcctccct |
172 |
Q |
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|||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||| |||| ||| |||||||||||||| |||| |||||| | ||| |
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| T |
31537739 |
atacatctcggtaaatatctgaattcggttcgtgtgagtacaaaggaaaatatagctgcaccaagtttaaaacaaaatcacccttccacttttcattcct |
31537838 |
T |
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| Q |
173 |
tgattgtttaaacatttg |
190 |
Q |
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| T |
31537839 |
tgattgtttaaacatttg |
31537856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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