View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_232 (Length: 211)
Name: NF3918_low_232
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_232 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 41806454 - 41806653
Alignment:
| Q |
1 |
gcaactcccatcgaatgcgacctgtgattcttgcatttaggatctaactaacatcgttgagcatgaaataaaagtactagatgtagtctatattaatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41806454 |
gcaactcccatcgaatgcgacctgtgattcttgcatttaggatctaactcccatcgttgagcatgaaataaaagtactagatgtagtctatattaatttc |
41806553 |
T |
|
| Q |
101 |
tgatcctaaacaactagtgaatattgatgtcacataagtatcctacatatgacaataatcctctttatattcaatacatgcataaaaatgattcacaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41806554 |
tgatcctaaacaactagtgaatattgatgtcacataagtatcctacatatgacaataatcctctttatattcaatacatgcataaaaatgattcacaggt |
41806653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 42034077 - 42033969
Alignment:
| Q |
21 |
cctgtgattcttg-catttaggatctaactaacatcgttgagcatgaaataaaagtactagatgtagtctatattaatttctgatcctaaacaactagtg |
119 |
Q |
| |
|
||||||||||||| |||||| |||| |||| |||| ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
42034077 |
cctgtgattcttggcatttatgatccaactcccatcattgagcatgaaataaaagtactagatgtagtctgtaataatttatgatcctaaacaactagtg |
42033978 |
T |
|
| Q |
120 |
aatattgat |
128 |
Q |
| |
|
||||||||| |
|
|
| T |
42033977 |
aatattgat |
42033969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University