View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_24 (Length: 564)
Name: NF3918_low_24
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Complemental strand, 25495657 - 25495124
Alignment:
| Q |
13 |
agcacagaaactcaaatcagatagacaaaaacttgcagcttcttgggtccaagctgccttatccaccaacctatcatccttttctgtttataaccgagag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495657 |
agcacagaaactcaaatcagatagacaaaaacttgcagcttcttgggtccaagctgccttatccaccaacctatcatccttttctgtttataaccgagag |
25495558 |
T |
|
| Q |
113 |
cctcaatcgtccaagcttcctgtttcaactacaagtagttctcaaaatcaaaagagtgttcttggaagtaaaccaattttagtcctcgaaaattcaagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495557 |
cctcaatcgtccaagcttcctgtttcaactacaagtagttctcaaaatcaaaagagtgttcttggaagtaaaccaattttagtcctcgaaaattcaagag |
25495458 |
T |
|
| Q |
213 |
aagacgcttcagtgaaagctaatggaaaaactcgtccagcagtagctaattccaaacaagccttgcaaggaactccgcgcaaacaaggtgatgcaatatc |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495457 |
aagacgcttcaatgaaagctaatggaaaaactcgtccagcagtagctaattccaaacaagccttgcaaggaactccgcgcaaacaaggtgatgcaatatc |
25495358 |
T |
|
| Q |
313 |
aaatccaaaaaagcaactaggtcaacaaccactccaagagtggattagaggaaatgaccttgatgcggcggttaatttagccgacatgctgcaattgcga |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495357 |
aaatccaaaaaagcaactaggtcaacaaccactccaagagtggattagaggaaatgaccttgatgcggcggttaatttagccgacatgctgcaattgcga |
25495258 |
T |
|
| Q |
413 |
tcacgagactggtttttattgtttgttgagaaatttttggatagtgatggagacattggtttgtcaaacaatggtcaaatagcaggcattctcactcaac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495257 |
tcacgagactggtttttattgtttgttgagaaatttttggatagtgatggagacattggtttgtcaaacaatggtcaaatagcaggcattctcactcaac |
25495158 |
T |
|
| Q |
513 |
taaaaagcgtcaacgattggttggatgagatagg |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25495157 |
taaaaagcgtcaacgattggttggatgagatagg |
25495124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 546
Target Start/End: Complemental strand, 42464971 - 42464898
Alignment:
| Q |
473 |
ttgtcaaacaatggtcaaatagcaggcattctcactcaactaaaaagcgtcaacgattggttggatgagatagg |
546 |
Q |
| |
|
|||||| | ||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| || |||||||| |
|
|
| T |
42464971 |
ttgtcagataatggccaaatagcaggtatgctcactcaactgaagagcgtaaacgattggttagacgagatagg |
42464898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University