View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_26 (Length: 552)
Name: NF3918_low_26
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Original strand, 13881126 - 13881636
Alignment:
| Q |
17 |
agtttctggattccctgtgcatggaaagtaagaagatgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtctaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881126 |
agtttctggattccctgtgcatggaaagtaagaaaatgttgaatgtaagaagggaaaacgtaaaacgtaagctatccgattaatattgattaaagtctaa |
13881225 |
T |
|
| Q |
117 |
agtgattaaacgcaatactatcataaatttagtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881226 |
agtgattaaacgcaatactatcataaatttagtaacacaagctggttttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaa |
13881325 |
T |
|
| Q |
217 |
tgatagtcaatctaaacgactattccacccataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgagga |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881326 |
tgatagtcaatctaaacgactattccaccaataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgagga |
13881425 |
T |
|
| Q |
317 |
aataaaccatgttacaaaacatataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatgnnnnnnnnnnnnnnnnnct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13881426 |
aataaaccatgttacaaaacatataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatgaaaaaaggaaaagaaaact |
13881525 |
T |
|
| Q |
417 |
tgcatattcaagcatattcaatacgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattga |
516 |
Q |
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| T |
13881526 |
tgcatat----------tcaatacgatatatgttctaatcgtgtagaacacaagcattttcgtggtaaactatatcgacaaacttttcaagttttattga |
13881615 |
T |
|
| Q |
517 |
tttttcatatgcatatagttga |
538 |
Q |
| |
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||||||||||||||||||||| |
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| T |
13881616 |
-ttttcatatgcatatagttga |
13881636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 13254518 - 13254759
Alignment:
| Q |
16 |
cagtttctggattccctgtgcatggaaagtaagaagatgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtcta |
115 |
Q |
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|||||||||||||| | ||||||||||||| ||| || ||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||| | |
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| T |
13254518 |
cagtttctggattctccgtgcatggaaagtcggaaaatattgaatgtaagaagggagagcgtaaaacgtaagctatccgattaatatcgattagagttaa |
13254617 |
T |
|
| Q |
116 |
aagtgattaaacgcaatactatc-at------------aaatttagtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaac |
202 |
Q |
| |
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||||||||||| ||||| ||||| || | ||| |||||||||||| |||||| || ||||||||||||||||||||||||| ||| |
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| T |
13254618 |
aagtgattaaaagcaatgctatctatattttgcaggtaagattcagtaacacaagcatgttttatcgtaaaatgagaccatctgcttccaatatctgaac |
13254717 |
T |
|
| Q |
203 |
tttctgcaatccaatgatagtcaatctaaacgactattccac |
244 |
Q |
| |
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|||||||||||||||||||||| | ||||| ||||||||||| |
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| T |
13254718 |
tttctgcaatccaatgatagtcgacctaaatgactattccac |
13254759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 429 - 538
Target Start/End: Original strand, 16022434 - 16022546
Alignment:
| Q |
429 |
catattcaatacgatatatgttctaatcgtgtagaa---cacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcata |
525 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||| ||| ||||||| ||| ||||||||||||||||||||| || ||||| ||||||| ||||| |
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| T |
16022434 |
catattcaatacgatatatgttctcatcatgaagaagaacacgagcattttcgtgataaactatatcgacaaactttccaggttttcttgatttctcata |
16022533 |
T |
|
| Q |
526 |
tgcatatagttga |
538 |
Q |
| |
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||||||||||||| |
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|
| T |
16022534 |
tgcatatagttga |
16022546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 428 - 538
Target Start/End: Complemental strand, 14389688 - 14389578
Alignment:
| Q |
428 |
gcatattcaatacgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatg |
527 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||||||| || |||| ||| ||||||||||| ||||||||| |||| ||| ||||||| ||| ||| |
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| T |
14389688 |
gcatattcaatacagtatatgttctcatcatgaagaacacgagaattttcgtgataaactatatcaacaaactttccaagctttcttgatttgtcaaatg |
14389589 |
T |
|
| Q |
528 |
catatagttga |
538 |
Q |
| |
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||||||||||| |
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| T |
14389588 |
catatagttga |
14389578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 14367313 - 14367230
Alignment:
| Q |
16 |
cagtttctggattccctgtgcatggaaagtaagaagatgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaa |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| | ||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
14367313 |
cagtctctggattccctgtgcatggaaagtcagaaattattgaatgtaagaagggatagcgtaaactgtaagctatccgattaa |
14367230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 16022307 - 16022378
Alignment:
| Q |
276 |
agttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacacta |
347 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| | |||||||||||||||||| |||||||||||||| |
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| T |
16022307 |
agttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacatataacacta |
16022378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 14389836 - 14389758
Alignment:
| Q |
278 |
ttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaact |
356 |
Q |
| |
|
||||||||| || ||||||||||| || ||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14389836 |
ttgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataacactccttaaaact |
14389758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 14367184 - 14367070
Alignment:
| Q |
147 |
agtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatcc-aatgatagtcaatctaaacgactattccacc |
245 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||||| ||| || || ||| || |||||||||| ||||||||| |
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|
| T |
14367184 |
agtaacacaagctggttttatattagaatgagaccatctgctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattccact |
14367085 |
T |
|
| Q |
246 |
cataggttaacatgt |
260 |
Q |
| |
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|| |||||||||||| |
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| T |
14367084 |
cacaggttaacatgt |
14367070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 13878561 - 13878638
Alignment:
| Q |
182 |
atctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccataggttaacatg |
259 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||||||| |||||||| | |||||| || || ||||||||||| |
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|
| T |
13878561 |
atctgctcccaatatcttaacttgctgcaaaccaatgataatcaatctatatacctattcaactcacaggttaacatg |
13878638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 13856744 - 13856788
Alignment:
| Q |
315 |
gaaataaaccatgttacaaaacatataacactacttaaaactcca |
359 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||| |||| |
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|
| T |
13856744 |
gaaataaaccatgttaccaaacatataacactccttaaaattcca |
13856788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 13139649 - 13139698
Alignment:
| Q |
77 |
taaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaa |
126 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||| |||||||||||| |
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|
| T |
13139649 |
taaaccgtaagttatctgattaatattgattaaagtgaaaagtgattaaa |
13139698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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