View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_28 (Length: 543)

Name: NF3918_low_28
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_28
NF3918_low_28
[»] chr1 (4 HSPs)
chr1 (18-483)||(395438-395901)
chr1 (396-473)||(28375690-28375766)
chr1 (406-478)||(31972636-31972708)
chr1 (399-463)||(29529081-29529144)
[»] chr7 (12 HSPs)
chr7 (396-471)||(18343910-18343985)
chr7 (396-471)||(18347439-18347514)
chr7 (396-471)||(18344813-18344888)
chr7 (396-471)||(18581948-18582023)
chr7 (398-471)||(19531553-19531626)
chr7 (398-472)||(42681338-42681411)
chr7 (396-471)||(31299699-31299773)
chr7 (398-471)||(42681195-42681267)
chr7 (406-456)||(9901996-9902046)
chr7 (406-456)||(21515998-21516048)
chr7 (406-456)||(28029733-28029783)
chr7 (406-456)||(36430608-36430658)
[»] chr3 (2 HSPs)
chr3 (398-473)||(45082746-45082821)
chr3 (399-471)||(30440644-30440715)
[»] chr5 (9 HSPs)
chr5 (391-476)||(10050870-10050955)
chr5 (397-471)||(6685889-6685963)
chr5 (402-467)||(9246609-9246674)
chr5 (396-471)||(4195747-4195821)
chr5 (396-471)||(34180899-34180973)
chr5 (406-456)||(3432382-3432432)
chr5 (406-456)||(4630401-4630451)
chr5 (406-456)||(16167781-16167831)
chr5 (406-456)||(35885773-35885823)
[»] chr4 (10 HSPs)
chr4 (402-474)||(748590-748662)
chr4 (396-471)||(1452387-1452462)
chr4 (397-473)||(53051467-53051542)
chr4 (399-471)||(14066299-14066370)
chr4 (406-457)||(32270455-32270506)
chr4 (406-477)||(40818912-40818983)
chr4 (406-477)||(42243869-42243940)
chr4 (406-456)||(7328098-7328148)
chr4 (406-456)||(7984535-7984585)
chr4 (406-456)||(29275996-29276046)
[»] chr8 (5 HSPs)
chr8 (397-474)||(41264116-41264192)
chr8 (406-477)||(4362751-4362822)
chr8 (406-456)||(12132478-12132528)
chr8 (406-456)||(14694837-14694887)
chr8 (406-456)||(33332331-33332381)
[»] chr2 (3 HSPs)
chr2 (406-456)||(5246077-5246127)
chr2 (406-456)||(43903894-43903944)
chr2 (399-464)||(17955705-17955769)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 395901 - 395438
Alignment:
Q  18 agttcgttaagtggaaatccaccaccaacttcataactcgtatcgctgctgctgct------taacacaattaatcgattcttctttttaacttttacca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  395901 agttcgttaagtggaaatccaccaccaacttcataactcgtatcgctgctgctgctgctgcttaacacaattaatcgattcttctttttaacttttacca 395802  T
Q  112 gattctgcttcaacttaaaacactcttggtaagtggaagttgttaagtttggaaaaatgtaaggagatgcttgtgtggatagagggaacaaaattgaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395801 gattctgcttcaacttaaaacactcttggtaagtggaagttgttaagtttggaaaaatgtaaggagatgcttgtgtggatagagggaacaaaattgaaga 395702  T
Q  212 agcgccaaacatagcgttttaaattaatggattaatttcgaatcgtttttgggggttctatctgggttttagctgcacaactcaaaataagaacaattgt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  395701 agcgccaaacatagcgttttaaattaatggattaatttcgaatcgttttt-ggggttctatctgggttttagctgcacaactcaaaataagaacaattgt 395603  T
Q  312 aagatactgga-----tatgttatagctaaacgaaaacaatcatttatatataaaaatatttatattattaaacctcttaataaaacatcaagccgtctt 406  Q
    |||||||||||     ||||||||||||||||| |||||||||| |||||||||| |||||||| ||||            |||||||  ||||||||||    
T  395602 aagatactggatatgttatgttatagctaaacggaaacaatcatatatatataaatatatttatgttat------------taaaacactaagccgtctt 395515  T
Q  407 agctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgttttttagattt 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395514 agctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgttttttagattt 395438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 28375766 - 28375690
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtt 473  Q
    ||||||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||||||    
T  28375766 caagccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgtt 28375690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 478
Target Start/End: Complemental strand, 31972708 - 31972636
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtttttta 478  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||  ||||| |  |||||||||||    
T  31972708 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgtttttta 31972636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 29529144 - 29529081
Alignment:
Q  399 gccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccac 463  Q
    |||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| |||||    
T  29529144 gccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccac 29529081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 18343910 - 18343985
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  18343910 caagccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 18343985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 18347439 - 18347514
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  18347439 caagccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagatggcg 18347514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 18344813 - 18344888
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  18344813 caagtcgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattgccacagacggcg 18344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 18582023 - 18581948
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||    
T  18582023 caagccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 18581948  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 19531553 - 19531626
Alignment:
Q  398 agccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||    
T  19531553 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 19531626  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 42681411 - 42681338
Alignment:
Q  398 agccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgt 472  Q
    |||||||||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||||||||||    
T  42681411 agccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcgt 42681338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 31299699 - 31299773
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||||    
T  31299699 caagccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 31299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 42681267 - 42681195
Alignment:
Q  398 agccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||||    
T  42681267 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 42681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 9901996 - 9902046
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  9901996 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 9902046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 21515998 - 21516048
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  21515998 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 21516048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 28029783 - 28029733
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  28029783 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 28029733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 36430658 - 36430608
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  36430658 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 36430608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 398 - 473
Target Start/End: Complemental strand, 45082821 - 45082746
Alignment:
Q  398 agccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtt 473  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  45082821 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgtt 45082746  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 471
Target Start/End: Original strand, 30440644 - 30440715
Alignment:
Q  399 gccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||||||||||| |||||||||||  |||||||||||  ||||||||||||||||| |||||||||||||    
T  30440644 gccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcg 30440715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 10050955 - 10050870
Alignment:
Q  391 aacatcaagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgttttt 476  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10050955 aacaccaagccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcgttttt 10050870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 397 - 471
Target Start/End: Complemental strand, 6685963 - 6685889
Alignment:
Q  397 aagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    |||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||    
T  6685963 aagccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 6685889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 467
Target Start/End: Original strand, 9246609 - 9246674
Alignment:
Q  402 gtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagac 467  Q
    ||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||    
T  9246609 gtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagac 9246674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 4195821 - 4195747
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    |||||||||||||||||| |||||||||||  |||||||||||  ||||||||||||||||| |||||||||||||    
T  4195821 caagccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcg 4195747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 34180899 - 34180973
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||||    
T  34180899 caagccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 34180973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 3432382 - 3432432
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  3432382 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 3432432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 4630401 - 4630451
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  4630401 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 4630451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 16167781 - 16167831
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  16167781 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 16167831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 35885823 - 35885773
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  35885823 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 35885773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 748590 - 748662
Alignment:
Q  402 gtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgttt 474  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  748590 gtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtttgattcccacagacggcgttt 748662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 1452462 - 1452387
Alignment:
Q  396 caagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    ||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||    
T  1452462 caagccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 1452387  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 397 - 473
Target Start/End: Complemental strand, 53051542 - 53051467
Alignment:
Q  397 aagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtt 473  Q
    ||||||||||||||||| |||||||||||  |||||||||||  ||||||||||||||||| |||||||||||||||    
T  53051542 aagccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcgtt 53051467  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 14066370 - 14066299
Alignment:
Q  399 gccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 471  Q
    |||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||||    
T  14066370 gccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 14066299  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 32270455 - 32270506
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgat 457  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||||||||    
T  32270455 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgat 32270506  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 477
Target Start/End: Complemental strand, 40818983 - 40818912
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtttttt 477  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||  ||||| |  ||||||||||    
T  40818983 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgtttttt 40818912  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 477
Target Start/End: Original strand, 42243869 - 42243940
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtttttt 477  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||  ||||| |  ||||||||||    
T  42243869 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgtttttt 42243940  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 7328148 - 7328098
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  7328148 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 7328098  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 7984535 - 7984585
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  7984535 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 7984585  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 29276046 - 29275996
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  29276046 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 29275996  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 474
Target Start/End: Original strand, 41264116 - 41264192
Alignment:
Q  397 aagccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgttt 474  Q
    |||||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||| ||||||||    
T  41264116 aagccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgttt 41264192  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 477
Target Start/End: Complemental strand, 4362822 - 4362751
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtttttt 477  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||  ||||| |  ||||||||||    
T  4362822 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgtttttt 4362751  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 12132478 - 12132528
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  12132478 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 12132528  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 14694837 - 14694887
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  14694837 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 14694887  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 33332381 - 33332331
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  33332381 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 33332331  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 5246077 - 5246127
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  5246077 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 5246127  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 43903944 - 43903894
Alignment:
Q  406 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 456  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  43903944 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 43903894  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 17955705 - 17955769
Alignment:
Q  399 gccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccaca 464  Q
    |||| |||||||||| |||||||||||  |||||||||||  ||||||||||||| ||| ||||||    
T  17955705 gccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggtttgatccccaca 17955769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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