View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_29 (Length: 536)
Name: NF3918_low_29
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 28094206 - 28093699
Alignment:
| Q |
19 |
gtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttactag |
118 |
Q |
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| T |
28094206 |
gtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttactag |
28094107 |
T |
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| Q |
119 |
aataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagaca |
218 |
Q |
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| T |
28094106 |
aataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagaca |
28094007 |
T |
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| Q |
219 |
tctatcaaaatcctctttatgtaatattgtaatgcaacaataccacattt---aagtttatattttgaatccccttcacatttgctccggttgaatgcgt |
315 |
Q |
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| T |
28094006 |
tctatcaaaatcctctttatgtaatattgtaatgcaacaaaataaaatgttgatagattatattttgaatccccttcacatttgctccggttgaatgcgt |
28093907 |
T |
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| Q |
316 |
atctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaacacgaatactgaacg |
415 |
Q |
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| T |
28093906 |
atctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaacacgaatactgaacg |
28093807 |
T |
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| Q |
416 |
cgacattgaccaagacacttcggcacccatagcatttggaaaaatgaattaattgaatgtaatccccttccgggaccctgtgtacgcgggagctttactg |
515 |
Q |
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| T |
28093806 |
tgacattgaccaagacacttcggcacccatagcatttggaaaaatgaattaattgaatgtaatcctcttccaagaccctgtgtacgcgggagctttactg |
28093707 |
T |
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| Q |
516 |
cacaggtt |
523 |
Q |
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| T |
28093706 |
caccggtt |
28093699 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 478
Target Start/End: Original strand, 41330312 - 41330341
Alignment:
| Q |
449 |
atttggaaaaatgaattaattgaatgtaat |
478 |
Q |
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| T |
41330312 |
atttggaaaaatgaattaattgaatgtaat |
41330341 |
T |
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