View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_30 (Length: 527)

Name: NF3918_low_30
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_30
NF3918_low_30
[»] chr6 (4 HSPs)
chr6 (352-517)||(33033027-33033191)
chr6 (158-268)||(33032796-33032906)
chr6 (178-268)||(33051060-33051148)
chr6 (95-130)||(33032608-33032643)
[»] chr4 (2 HSPs)
chr4 (207-268)||(8264038-8264099)
chr4 (207-268)||(8277456-8277517)
[»] chr7 (1 HSPs)
chr7 (213-253)||(7975171-7975211)
[»] chr5 (1 HSPs)
chr5 (213-253)||(13838199-13838239)
[»] chr3 (1 HSPs)
chr3 (213-253)||(1293852-1293892)
[»] chr2 (2 HSPs)
chr2 (213-253)||(26543756-26543796)
chr2 (213-248)||(43313163-43313198)
[»] chr1 (1 HSPs)
chr1 (209-253)||(9901073-9901117)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 352 - 517
Target Start/End: Original strand, 33033027 - 33033191
Alignment:
Q  352 tggactcatctatttgctccatgatctactagcagtaattt-aaaacaaacaccattgtttgacactatgaaagtctagtagatatctagtctttagtga 450  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||| ||| |||||||||||||||||||||    
T  33033027 tggactcatccatttgctccatgatctactagcagtaattttaaaacaaacaccattatttgacact--gaaagactaatagatatctagtctttagtga 33033124  T
Q  451 tcttagcttgttcaaattcaatgtttatttttaggccaaatacctccctggataagtttcacctttg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  33033125 tcttagcttgttcaaattcaatgtttatttttaggccaaatacctccctgggtaagtttcacgtttg 33033191  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 33032796 - 33032906
Alignment:
Q  158 aaaatagaaatttgatcggatcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgttt 257  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032796 aaaatagaaatttgatctgatcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgttt 33032895  T
Q  258 ccgtgctgata 268  Q
    |||||||||||    
T  33032896 ccgtgctgata 33032906  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 33051060 - 33051148
Alignment:
Q  178 tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgata 268  Q
    |||||||||| ||||| |||| |  ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  33051060 tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctcatgtttcaatgctgata 33051148  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 33032608 - 33032643
Alignment:
Q  95 tgatttataattttgtctgttacacaactttattta 130  Q
    |||| |||||||||||||||||||||||||||||||    
T  33032608 tgatgtataattttgtctgttacacaactttattta 33032643  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 8264038 - 8264099
Alignment:
Q  207 tttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgata 268  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| || | |||||||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgata 8264099  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 8277456 - 8277517
Alignment:
Q  207 tttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgata 268  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| || | |||||||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgata 8277517  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 7975171 - 7975211
Alignment:
Q  213 ggctatgatgagtcatagagatagtcatgcaccactctgat 253  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat 7975211  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 13838239 - 13838199
Alignment:
Q  213 ggctatgatgagtcatagagatagtcatgcaccactctgat 253  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat 13838199  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 1293892 - 1293852
Alignment:
Q  213 ggctatgatgagtcatagagatagtcatgcaccactctgat 253  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat 1293852  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 26543796 - 26543756
Alignment:
Q  213 ggctatgatgagtcatagagatagtcatgcaccactctgat 253  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat 26543756  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 43313198 - 43313163
Alignment:
Q  213 ggctatgatgagtcatagagatagtcatgcaccact 248  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43313198 ggctatgatgaatcatagagatagtcatgcaccact 43313163  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 9901117 - 9901073
Alignment:
Q  209 tattggctatgatgagtcatagagatagtcatgcaccactctgat 253  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||    
T  9901117 tattggctatgatgaattttagagatagtcatgcaccactctgat 9901073  T

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