View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_32 (Length: 506)
Name: NF3918_low_32
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 2443079 - 2443387
Alignment:
| Q |
16 |
attattcctatttcaatgaattattgctattttaatggaatttaagcaagnnnnnnncaattaaagataaatagtaacaaacctgccctatatttgtttt |
115 |
Q |
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| T |
2443079 |
attattcctatttcaatgaattattgctattttaatggaatttgagcaagttttt--caattaaagataaatcgtaacaaaactgcg-tatacttgtttt |
2443175 |
T |
|
| Q |
116 |
aagaaaattgtaacaaacaatttccaaactaattaaacaagcacttttatcttttcatcaactataaataaacctagatacctactttc---gttcactc |
212 |
Q |
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| T |
2443176 |
aagaaaattgtaacaaacaatttccaaactaattaaacaaacacttttatcttttcatcaactataaataaacctaggtacctactttccaagttcactc |
2443275 |
T |
|
| Q |
213 |
tttttactctcgcaaaacagttgcaagtcttttaatcgacggtttcaaagtcgctctcttaggctatggtggaataattgtacctatgccttgtggacac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || |
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| T |
2443276 |
tttttactctcgcaaaacagttgcaagtcttttaatcgacggtttcaaagtcgctctcttaggctatggtggaataattgtacatatgccttgt-gatac |
2443374 |
T |
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| Q |
313 |
caaaatcatcact |
325 |
Q |
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||||||||||||| |
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| T |
2443375 |
caaaatcatcact |
2443387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 388 - 502
Target Start/End: Original strand, 2443385 - 2443501
Alignment:
| Q |
388 |
actctgatcccggtcttaaatgaagaagatctccatgatatgatattcaagtatgatcgtgtg--tcgcatttcgccaacacctccaatgttgagggtct |
485 |
Q |
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||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |
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| T |
2443385 |
actctgatcccagtcttaaatgaagaagatatcgatgatatgatgttcaagtatgatcgtgtgtctcgcattttgccaacacctcccatgttgagggtct |
2443484 |
T |
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| Q |
486 |
tcttcttctctgctcct |
502 |
Q |
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| T |
2443485 |
tcctcttccctgttcct |
2443501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 444
Target Start/End: Complemental strand, 28399653 - 28399582
Alignment:
| Q |
373 |
ggtcatgatctcgatactctgatcccggtcttaaatgaagaagatctccatgatatgatattcaagtatgat |
444 |
Q |
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||||| |||||||||||| ||||||| |||||||| | |||||| | |||||||||| |||||||||||| |
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| T |
28399653 |
ggtcaagatctcgatactttgatcccagtcttaaaccaggaagatttggatgatatgatgttcaagtatgat |
28399582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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