View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_33 (Length: 502)
Name: NF3918_low_33
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 103 - 480
Target Start/End: Original strand, 53086403 - 53086781
Alignment:
| Q |
103 |
cctcttgggttgggttcggtttgaagaagtggaggaagattaacagtgttgctctgactcggaaacgcttcaaggttactactagtgtgcaagttgacat |
202 |
Q |
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| T |
53086403 |
cctcttgggttgggttgggtttgaagaagtggaggaagattaacagtgttgctctgactcggaaacgcttcaacgttactactagtgtgcaagttgacat |
53086502 |
T |
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| Q |
203 |
tattgatttcatttctttgacttaactgcaatagacagttcaattgaatgcaagcatttaaagtgtgagcagaaattaaatatataatttgtcacattgt |
302 |
Q |
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| T |
53086503 |
tattgatttcatttctttgacttaactgcaatagacagttgaattgaatgcaagcatttaaagtgtgagcagaaattaaatatataatttgtaacattgt |
53086602 |
T |
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| Q |
303 |
tgactaatatttgttggatactcattctagattctgatatttatttattaaattaaaccataagcagagttaattataagagttagttgagctgaaaaca |
402 |
Q |
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| T |
53086603 |
tgactaatatttgttggatactcattctagattctgatatttatttattaaattaaaccataagcagagttaattataagagttagttgagctgaaaaca |
53086702 |
T |
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| Q |
403 |
gaattgaaatat-aaactgctaaattgaataagtattatgaagagcaacaaattgtaacattgttgttccctataacat |
480 |
Q |
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| T |
53086703 |
gaattgaaatataaaactgctaaattgaataagtattatgaagagcaacaaattgtaacattgttgctccctataacat |
53086781 |
T |
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