View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_34 (Length: 500)
Name: NF3918_low_34
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Original strand, 22789332 - 22789809
Alignment:
| Q |
17 |
atttatgcattcattaatttgaacccctgactttcgattaatacatagagatgttatcttctcatcagtgtgttacttctacattaaaaattttcctccc |
116 |
Q |
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| T |
22789332 |
atttatgtattcattaatttgaacccctgactttcgattaatacatagagatgttatcttctcatcagtgtgttacttctacattaaaatttttcctccc |
22789431 |
T |
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| Q |
117 |
tttacactattattttattttgtgaactttcctatctagtgtaagatcaagtgatcaatcacatgtgctatagggacaagcatgatacatcaatttattc |
216 |
Q |
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| T |
22789432 |
tttacactattattttattttgtgaactttcctatctagtgtaagatcaagtgatcaatcacatgtgctatagggacaagcatgatacatcaatttattc |
22789531 |
T |
|
| Q |
217 |
aaaagacatttaaaaataagttaaatttgaataaagggtttcttgcaagtaaatatagcagaaggttttttactatataaattaatcaacgaatttctat |
316 |
Q |
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| T |
22789532 |
aaaagacatttaaaaataagttaaatttgaataaagggtttcttgcaagtaaatatagcagaaggttttttactatataaattaatcaacgaatttctat |
22789631 |
T |
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| Q |
317 |
ttgttaaatgaaatggtggaaaagatggttggaattctcaagtttgtttgcccctttttgtttctctatttcttgttattatcaatgttggtggtaagct |
416 |
Q |
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| T |
22789632 |
ttgttaaatgaaatggtggaaaagatggttggaattctcaagtttgtttgcccctttttgtttctctatttcttgttattatcaatgttggtggtaagct |
22789731 |
T |
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| Q |
417 |
cattgtcctattcttttgtatttatcctatgcaaaacatttcttctcttttcgaaatatttctttgttttcatatcac |
494 |
Q |
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| T |
22789732 |
cattgtcctattcttttgtatttatcctatgcaaaacatttcttctcttttcgaaatatttctttgttttcatttcac |
22789809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 117 - 442
Target Start/End: Original strand, 22815583 - 22815918
Alignment:
| Q |
117 |
tttacactattattttattttgtgaactttcctatctagtgtaagatcaagtgatcaatcacatgtgctatagggacaagcatgatacatcaatttattc |
216 |
Q |
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|||||||| |||||| |||||||||| |||||||| | ||||||||||| |||||||| | |||||||| |||| | | ||| ||||||||| |||| |
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| T |
22815583 |
tttacactcttattt-attttgtgaaatttcctatttcttgtaagatcaaatgatcaattatatgtgctaaaggggcgaacatagtacatcaatatattt |
22815681 |
T |
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| Q |
217 |
aaaagacatttaaaaataagttaaatttgaataaagggtttcttgcaagt-aaatatagcagaaggttttttactatataaattaatcaacgaatttcta |
315 |
Q |
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|| ||||||||||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||| ||||| ||| |||||||| | ||| || || || |
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| T |
22815682 |
aagagacatttaaaaataagtttaattttaataaagggtttcttgcaaataaaacatagcagaagatttttaactgtataaattgaataacaaaatttta |
22815781 |
T |
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| Q |
316 |
tttgttaaatgaaatggtgg---aaaagatggttggaattctcaagtttgtt-------tgcccctttttgtttctctatttcttgttattatcaatgtt |
405 |
Q |
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|||||| ||||||||||| |||| ||||||| |||||||||||||||| | | ||||||| ||||||||||||||||| ||||||||||| |
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| T |
22815782 |
tttgttgcgtgaaatggtggggaaaaaaatggttgaaattctcaagtttgtttatattatactcctttttatttctctatttcttgttgttatcaatgtt |
22815881 |
T |
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| Q |
406 |
ggtggtaagctcattgtcctattcttttgtatttatc |
442 |
Q |
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| T |
22815882 |
gatggtaaacttattttcatattcttttgtatttatc |
22815918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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