View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_38 (Length: 488)
Name: NF3918_low_38
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 44791744 - 44791972
Alignment:
| Q |
20 |
atgcttaatggtgctagccaaatctatgtgaaaacctcacgaatgacgtgccttagtctctaaagtcataatcccaaataaagtgaattgacatgttgct |
119 |
Q |
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| T |
44791744 |
atgcttaatggtgctaaccaaatttatgtgaaaacctcacgaatgacgtgccttagtctctaaagtcataatcccaaataaagtgaattgacatgttact |
44791843 |
T |
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| Q |
120 |
catgagctaactagtggttgttgaagacactctcagttttagtagtataaatcaatggcaacaactattactatataaggaaaagaaaagataagaagat |
219 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |
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| T |
44791844 |
catgagctaactagtgtttgttgaagacactctcagttttagtagtataaatcaatggcaaaaactattactatataaggaaaagaagagataagcagat |
44791943 |
T |
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| Q |
220 |
gacaatactgtttatcaacaatgatattt |
248 |
Q |
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| T |
44791944 |
gacaatactgtttatcaacaatgatattt |
44791972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 238 - 473
Target Start/End: Complemental strand, 44616653 - 44616420
Alignment:
| Q |
238 |
caatgatattttaacaccttaattttttatgcaccccacccattcaacaccccattttatttagatctttcacttttcatcatatcactaaactataaga |
337 |
Q |
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| T |
44616653 |
caatgatattttaacaccttaatttttcatgcaccc-----attcaacaccccattttatttagatctttcacttttcatcatatcactaaactataaga |
44616559 |
T |
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| Q |
338 |
tcactctcttctttttt---cccctcttagtttaaaggtatatatactcacatcatgtgtacacaaaaacatttcctaatatttaagaactctagtccat |
434 |
Q |
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| T |
44616558 |
tcactctcttctttttttttcccctcttagtttaaaggtatatatactcacatgatgtgtacacaaaaacatttcctaatatttaagaactctggtccat |
44616459 |
T |
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| Q |
435 |
cctacttgcttaatcccaactacaaaattaacaaaaatt |
473 |
Q |
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| T |
44616458 |
cctacttgcttaatcccaactacaaaattaacaaaaatt |
44616420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 295 - 473
Target Start/End: Original strand, 44791968 - 44792149
Alignment:
| Q |
295 |
tatttagatctttcacttttcatcatatcactaaactataagatcactctcttctttt---ttcccctcttagtttaaaggtatatatactcacatcatg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
44791968 |
tatttagatctttcacttttcatcatatcactaaactataagatcactctcttctttttttttcccctcttagtttaaaggtatatatactcacatgatg |
44792067 |
T |
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| Q |
392 |
tgtacacaaaaacatttcctaatatttaagaactctagtccatcctacttgcttaatcccaactacaaaattaacaaaaatt |
473 |
Q |
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| T |
44792068 |
tgtacacaaaaacatttcctaatatttaagaactctggtccatcctacttgcttaatcccaactacaaaattaacaaaaatt |
44792149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 44616820 - 44616651
Alignment:
| Q |
11 |
caaagggagatgcttaatggtgctagccaaatctatgtgaaaacctcacgaatgacgtgccttagtctctaaagtcataatcccaaataaagtgaattga |
110 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44616820 |
caaagggagatgcttaatggtgctaaccaaatttatgtgaaaacctcacgaatgacgtgccttagtctctaaagtcataatcccaaataaagtgaattga |
44616721 |
T |
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| Q |
111 |
catgttgctcatgagctaactagtggttgttgaagacactctcagttttagtagtataaatcaatggcaa |
180 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44616720 |
catgttactcatgagctaactagtggttgttgaagacactctcagttttagtagtataaatcaatggcaa |
44616651 |
T |
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