View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_40 (Length: 477)
Name: NF3918_low_40
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Original strand, 37485078 - 37485540
Alignment:
| Q |
15 |
caaatcaacaccgctacctcgcaatgaacaaaaaggtgagtcgacgtctcctccccatgagcgcaaaagacacattcacgggactctccgggagctaaaa |
114 |
Q |
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| T |
37485078 |
caaatcaacaccgctacctcgcaatgaacaaaaaggtgagtcgacgtctcctccccatgagcgcaaaagacacattcacgggactcgctgggagctaaaa |
37485177 |
T |
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| Q |
115 |
catgtcgccaagctagatttgaccgcgttgggatacgatcaataatctccaaccaagaaaacgtcaccaccttggacggtgccggactcttccacagctt |
214 |
Q |
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| T |
37485178 |
catgtcgccaaactagatttgaccgcgttgggatacgatcaataatcgccaaccaaaaaaacgtcaccaccttggacggtgccggactcttccacagctt |
37485277 |
T |
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| Q |
215 |
agcaaaagactcttccacttcctcactcaacccatcttccaaaagcaccatatccacaagaactctataggacgagtttatcgaaaaaatcccactatct |
314 |
Q |
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| T |
37485278 |
aacaaaagactcttccacttcctcactcaacccatcttccaaaagcaccatatccacaagaactctataggacgagtttaccgagaaaatcccactatct |
37485377 |
T |
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| Q |
315 |
tccggcaaccaccaccacctatccacttcctcccccaaggttatgccctctaacttagccaagcattcaacaattaaattgttctcccaaaggaaagtac |
414 |
Q |
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| T |
37485378 |
tccgacaaccaccaccacctatccacttcctcccccaaggttacgccctctaacttagccaagcattccacaattaaattgttctcccaaaggaaagtac |
37485477 |
T |
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| Q |
415 |
gcctccgccacaaaaagttccaagacacttcatcgttatgcaagacccacaagtcccggacct |
477 |
Q |
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| T |
37485478 |
gtctccgccacaaaaagttccaagacacttcaccgttatgcaagacccacaagtcccggacct |
37485540 |
T |
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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 44645541 - 44645348
Alignment:
| Q |
15 |
caaatcaacaccgctacctcgcaatgaacaaaaaggtgagtcgacgtctcctccccatgagcgcaaaagacacattcacgggactctccgggagctaaaa |
114 |
Q |
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||||||| |||| |||| || |||||||| ||||| |||| || |||||||||||||| |||| || |||| || || | ||| |||||||||||| |
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| T |
44645541 |
caaatcatcaccactacgtcacaatgaaccaaaagatgagccgttgtctcctccccatgtccgcataaagcacactctcgaggctcaccgggagctaaag |
44645442 |
T |
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| Q |
115 |
catgtcgccaagctagatttgaccgcgttgggatacgatcaataatctccaaccaagaaaacgtcaccaccttggacggtgccggactcttcca |
208 |
Q |
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| T |
44645441 |
catgcctcctatcaagatttgaccgcgtagggatacgaccaataatagccagccaagaaaaagccaccaccttggatggagccgaactcttcca |
44645348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 263
Target Start/End: Complemental strand, 15316335 - 15316174
Alignment:
| Q |
102 |
ccgggagctaaaacatgtcgccaagctagatttgaccgcgttgggatacgatcaataatctccaaccaagaaaacgtcaccaccttggacggtgccggac |
201 |
Q |
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|||| |||||||||| | || ||||||||||||| | || ||||| ||||||||||| ||| |||||| || | ||| ||||| ||||| ||||||| |
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| T |
15316335 |
ccggtagctaaaacacgacgaaaagctagatttgatctagtagggatgcgatcaataatagccatccaagagaaagccacaaccttagacggagccggac |
15316236 |
T |
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| Q |
202 |
tcttccacagcttagcaaaagactcttccacttcctcactcaacccatcttccaaaagcacc |
263 |
Q |
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| T |
15316235 |
ttttccaaagcttaacaaaagcccattcctcttccacacccaaaccttcttccacaagcacc |
15316174 |
T |
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