View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_42 (Length: 468)
Name: NF3918_low_42
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 14788876 - 14789200
Alignment:
| Q |
18 |
agaacctattcaaacaatgattgatgctactttttcttctagaacattttcttcaaggaatatggaaattcgtcatggttttcttacaaggttgagaaaa |
117 |
Q |
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| T |
14788876 |
agaacctattcaaacaatgattgatgctactttttcttctagaacattttcttcaaggaatacggaaattcgtcatggttttcttacaaggttgagaaaa |
14788975 |
T |
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| Q |
118 |
tcaacatggagaactttggtacaatttttcaggtctttgaacacattaaggcataaaatggagaggccatcaagaaaaatgtccagagataataatattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788976 |
tcaacatggagaactttggtacaatttttcaggtctttgaacacattaaggcataaaatggagaggccatcaagaaaaatgtccagagataataatattt |
14789075 |
T |
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| Q |
218 |
acaagacaaataagttagctaaaagcttgagcagaagttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagc |
317 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789076 |
acaagacaaataggttagttaaaagcttgagcagaagttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagc |
14789175 |
T |
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| Q |
318 |
agtcctccattgcaaaagatcaata |
342 |
Q |
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| T |
14789176 |
agtcctccattgcaaaagatcaata |
14789200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 14789278 - 14789316
Alignment:
| Q |
420 |
gcttaattacttggaaagttgaattcattatttcttcat |
458 |
Q |
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| T |
14789278 |
gcttaattacttggaacgttgaattcattatttcttcat |
14789316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 17543671 - 17543345
Alignment:
| Q |
18 |
agaacctattcaaacaatgattgatgctactttttcttctagaacattttcttcaaggaatatggaaattcgtcatggttttcttacaaggttgagaaaa |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543671 |
agaacctattcaaacaatgtttgatgctactttttcttctagaacattttcttcaaggaatatggaaattcgtcatggttttcttacaaggttgagaaaa |
17543572 |
T |
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| Q |
118 |
tcaacatggagaactttggtacaatttttcaggtctttgaacacattaaggcataaaatggagaggccatcaagaaaaatgtccagagataataatattt |
217 |
Q |
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| T |
17543571 |
tcaacatggagaactttggtacaatttttcaggtctttgaacacattaaggcataaaatggagaggccatcaagaaaaatgtccagagataatgatatat |
17543472 |
T |
|
| Q |
218 |
acaagacaaataagttagctaaaagcttgagcagaagttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagc |
317 |
Q |
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|||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543471 |
acaagacaaataggttagttaaaagcttgagcagaggttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagc |
17543372 |
T |
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| Q |
318 |
agtcctccattgcaaaagatcaatagg |
344 |
Q |
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| T |
17543371 |
agtcctccattgcaaaagatcaatagg |
17543345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 17543258 - 17543226
Alignment:
| Q |
420 |
gcttaattacttggaaagttgaattcattattt |
452 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
17543258 |
gcttaattacttggaacgttgaattcattattt |
17543226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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