View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_44 (Length: 463)
Name: NF3918_low_44
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 6336227 - 6335780
Alignment:
| Q |
1 |
ttccaacgtccatgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336227 |
ttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
6336128 |
T |
|
| Q |
101 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336127 |
acaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
6336028 |
T |
|
| Q |
201 |
ataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttc |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336027 |
ataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttc |
6335928 |
T |
|
| Q |
301 |
ttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatcttgaannnnnnnnnnnattaattttcatgatcatgataaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |||| |
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| T |
6335927 |
ttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatcttgatttatttttttgattaatttttatcatcatggtaaa |
6335828 |
T |
|
| Q |
401 |
ttaaaattgtttaagatctgtttagattaattaaagatttgtttgtttt |
449 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6335827 |
at-aaattggttaagatctgtttagattaattaaagatttgtttgtttt |
6335780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 6328669 - 6328222
Alignment:
| Q |
1 |
ttccaacgtccatgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328669 |
ttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
6328570 |
T |
|
| Q |
101 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328569 |
acaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
6328470 |
T |
|
| Q |
201 |
ataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttc |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328469 |
ataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttc |
6328370 |
T |
|
| Q |
301 |
ttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatcttgaannnnnnnnnnnattaa-ttttcatgatcatgataa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||| ||| |
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| T |
6328369 |
ttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatcttg-atttattttttgattaattttttatgatcatggtaa |
6328271 |
T |
|
| Q |
400 |
attaaaattgtttaagatctgtttagattaattaaagatttgtttgtttt |
449 |
Q |
| |
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| | |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6328270 |
aat-aaattggttaagatctgtttagattaattaaagatttgtttgtttt |
6328222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 6351212 - 6350765
Alignment:
| Q |
1 |
ttccaacgtccatgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6351212 |
ttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtagtggacgttggaatatgggctatgcaatcaaaattgtt |
6351113 |
T |
|
| Q |
101 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351112 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
6351013 |
T |
|
| Q |
201 |
ataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttc |
300 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351012 |
ataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttc |
6350913 |
T |
|
| Q |
301 |
ttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatcttgaannnnnnnnnnnattaa-ttttcatgatcatgataa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||| ||| |
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| T |
6350912 |
ttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatcttg-acttattttttgattaattttttatgatcatggtaa |
6350814 |
T |
|
| Q |
400 |
attaaaattgtttaagatctgtttagattaattaaagatttgtttgtttt |
449 |
Q |
| |
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| | |||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6350813 |
aat-aaattggttaagatctgtttagattaattaaagatttgtttgtttt |
6350765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 159 - 345
Target Start/End: Original strand, 6488955 - 6489141
Alignment:
| Q |
159 |
catttttgtgctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
258 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| ||||| | | |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6488955 |
catttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtggaatgctggtttatggcgttgaagatg |
6489054 |
T |
|
| Q |
259 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
345 |
Q |
| |
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| ||||| |||| ||| |||||||| ||||| ||||| |||||||| || |||||||| |||| ||| |||||||| ||||| |||| |
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|
| T |
6489055 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
6489141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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