View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_47 (Length: 457)
Name: NF3918_low_47
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 26017466 - 26017036
Alignment:
| Q |
18 |
gaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||| |
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| T |
26017466 |
gaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttctgtgccgcgaattccgaa |
26017367 |
T |
|
| Q |
118 |
gcttttgtacctccatgtccatcaaatatgccnnnnnnngcctgtaccaatcacaaacaaaaatcttagactatatattggtccttgcacatgcatccat |
217 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
26017366 |
gcttttgtacctccatgtccatcaaatatgccaaaaaatgcctgtaccaatcacaaacaaaaatcttagactatatattggtccttacacatgtatccat |
26017267 |
T |
|
| Q |
218 |
tttgtaaatcccattaaccataaattcaataagacctttccaaatttgtttaataaatctatatagtat--nnnnnnnnnnnnnnngatgaacaaatcca |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26017266 |
tttgtaaatcccattaaccataaatttaataagacctttccaaatttgtttaataaatctatatagtataaaaaaaaaaaaaaaaagatgaacaaatcca |
26017167 |
T |
|
| Q |
316 |
tgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017166 |
tgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacaca |
26017067 |
T |
|
| Q |
416 |
gaaaacccatctccttctacctcaacaacat |
446 |
Q |
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| T |
26017066 |
gaaaacccatctccttctacctcaacaacat |
26017036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 26002654 - 26002523
Alignment:
| Q |
18 |
gaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctgaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| ||| |
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| T |
26002654 |
gaggtaaccatgtttcactgcttcctcaatatcactctcatctcttctgattacttcttctaacacattcttttccaagttctgtgccgcgaattccgaa |
26002555 |
T |
|
| Q |
118 |
gcttttgtacctccatgtccatcaaatatgcc |
149 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26002554 |
gcttttgtacctccatgtccatcaaatatgcc |
26002523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 26002114 - 26001993
Alignment:
| Q |
325 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
424 |
Q |
| |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
|
| Q |
425 |
tctccttctacctcaacaacat |
446 |
Q |
| |
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||||| || ||||||||||||| |
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|
| T |
26002014 |
tctccctccacctcaacaacat |
26001993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 446
Target Start/End: Complemental strand, 30373307 - 30373232
Alignment:
| Q |
371 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacat |
446 |
Q |
| |
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|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||| |
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| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacat |
30373232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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