View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_48 (Length: 456)

Name: NF3918_low_48
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_48
NF3918_low_48
[»] chr5 (7 HSPs)
chr5 (11-437)||(14502688-14503114)
chr5 (365-421)||(35621139-35621195)
chr5 (348-434)||(2684839-2684925)
chr5 (351-388)||(11404691-11404728)
chr5 (351-421)||(38844067-38844137)
chr5 (348-390)||(3954416-3954458)
chr5 (351-408)||(10243172-10243229)
[»] chr8 (4 HSPs)
chr8 (348-424)||(3053336-3053412)
chr8 (348-439)||(32943493-32943584)
chr8 (348-433)||(26457072-26457155)
chr8 (360-409)||(5501407-5501456)
[»] chr7 (6 HSPs)
chr7 (348-437)||(44397446-44397540)
chr7 (348-389)||(5968381-5968422)
chr7 (348-388)||(12296457-12296497)
chr7 (357-397)||(30785494-30785534)
chr7 (351-433)||(5254975-5255058)
chr7 (357-396)||(45630195-45630234)
[»] chr4 (14 HSPs)
chr4 (348-436)||(9088137-9088225)
chr4 (353-428)||(22226976-22227049)
chr4 (351-439)||(31012548-31012636)
chr4 (373-439)||(23775261-23775327)
chr4 (351-388)||(5579780-5579817)
chr4 (348-390)||(50116311-50116353)
chr4 (348-397)||(17056022-17056071)
chr4 (348-429)||(53718271-53718352)
chr4 (356-400)||(9290164-9290208)
chr4 (360-391)||(53963384-53963415)
chr4 (360-390)||(45652127-45652157)
chr4 (363-391)||(13843188-13843216)
chr4 (351-399)||(28184379-28184427)
chr4 (364-400)||(35298245-35298281)
[»] chr1 (5 HSPs)
chr1 (357-433)||(44058235-44058309)
chr1 (357-398)||(48217318-48217359)
chr1 (355-427)||(23615426-23615497)
chr1 (355-439)||(23646707-23646791)
chr1 (360-391)||(49208255-49208286)
[»] chr2 (8 HSPs)
chr2 (348-427)||(32886571-32886648)
chr2 (350-426)||(13601270-13601344)
chr2 (362-434)||(15372090-15372160)
chr2 (360-391)||(38611346-38611377)
chr2 (353-383)||(22358908-22358938)
chr2 (355-419)||(26911233-26911295)
chr2 (350-391)||(43449623-43449664)
chr2 (351-384)||(44985587-44985620)
[»] chr3 (5 HSPs)
chr3 (348-399)||(51818414-51818465)
chr3 (351-391)||(48923489-48923529)
chr3 (353-391)||(19279661-19279699)
chr3 (360-389)||(47896465-47896494)
chr3 (360-437)||(55159556-55159633)
[»] chr6 (4 HSPs)
chr6 (348-389)||(24619364-24619405)
chr6 (348-389)||(8438948-8438989)
chr6 (348-419)||(1350497-1350566)
chr6 (355-427)||(24980167-24980238)
[»] scaffold0504 (1 HSPs)
scaffold0504 (351-408)||(6846-6903)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 14503114 - 14502688
Alignment:
Q  11 ctttggtgctctcataattaagccttctcatagagtttaaaactatgtactatatgtatctttattcaaatccacaatgtattgctgatttgctggtact 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14503114 ctttggtgctctcataattaagccttctcatagagtttaaaactatgtactatatgtatctttattcaaatccacaatatattgctgatttgctggtact 14503015  T
Q  111 aatcattttgattgtagatttaggtaatatacatgtaaaaatagtgaggtctaagtaagttaagnnnnnnnnactcaaatgaaaatannnnnnnaattgc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||       ||||||    
T  14503014 aatcattttgattgtagatttaggtaatatacatgtaaaaatagtgaggtctaagtaagttaag----ttttactcaaatgaaaatatttttttaattgc 14502919  T
Q  211 attcaagtgtactgcatgcatgccttcttatggtttttgtattgcatctctgatatgtttaattctaattattctcatttag---attataataactgga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  14502918 attcaagtgtactgcatgcatgccttcttatggtttttgtattgcatctctgatatgtttaattctaattattctcatttagattattataataactgga 14502819  T
Q  308 tttgtaatttattaagaacataataatcctatc-nnnnnnnaagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaa 406  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14502818 tttgtaatttattaagaacataataatcctatcttttttttaagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaa 14502719  T
Q  407 atacttttgatttgaggttgtgcccaaccaa 437  Q
    |||||||||||||||||||||||||||||||    
T  14502718 atacttttgatttgaggttgtgcccaaccaa 14502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 35621139 - 35621195
Alignment:
Q  365 tatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttga 421  Q
    ||||||||||||||||||||||||||| || | |||| |||||||||||||||||||    
T  35621139 tatttctcttttaaattttatcatttatgtatttgcgtctaaatacttttgatttga 35621195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 2684925 - 2684839
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaac 434  Q
    ||||||| ||||| ||||||||||||||||||| |||||||| | ||||||    |||||||||||||||||  | |||||||||||    
T  2684925 aagtgatttgacttaattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttaggattgtgcccaac 2684839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 11404691 - 11404728
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcat 388  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11404691 tgatgtgactaaattatttctcttttaaattttatcat 11404728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 38844067 - 38844137
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttga 421  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||  |    |||||||||||||||||||    
T  38844067 tgatgtgactaaattatttatcttttaaattttatcacttatgtgaatatatctaaatacttttgatttga 38844137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 3954458 - 3954416
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcattt 390  Q
    ||||||| ||||||||||| || ||||||||||||||||||||    
T  3954458 aagtgatatgactaaattacttttcttttaaattttatcattt 3954416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 10243172 - 10243229
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaat 408  Q
    |||||||||||  |||||| |||||||| |||| | ||||| ||||||||||||||||    
T  10243172 tgatgtgactattttatttatcttttaatttttttgatttatgtgtgtgcgcctaaat 10243229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 3053412 - 3053336
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggt 424  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||||||    
T  3053412 aagtgatgtgactaaattatttctcttttaaattttatcatttatgtgtgtatgcttaaatactcttgatttgaggt 3053336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 439
Target Start/End: Complemental strand, 32943584 - 32943493
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaaccaagt 439  Q
    ||||||| ||||| |||||||| || |||||||||||| ||||| ||||||||| | |||||||||||||||| ||||||| ||||||||||    
T  32943584 aagtgatatgacttaattatttttcatttaaattttattatttatgtgtgtgcgtccaaatacttttgatttgtggttgtgtccaaccaagt 32943493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 433
Target Start/End: Complemental strand, 26457155 - 26457072
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaa 433  Q
    ||||||||| |||||||||||||||||||||||||||| |||||  ||| || | | |||| ||||||||||| ||||||||||||    
T  26457155 aagtgatgtaactaaattatttctcttttaaattttattattta--tgtatgtgtccaaatgcttttgatttggggttgtgcccaa 26457072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 5501407 - 5501456
Alignment:
Q  360 taaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaata 409  Q
    ||||||||||||||||||||||||||||||   |||| ||||||||||||    
T  5501407 taaattatttctcttttaaattttatcattcttgtgtatgcgcctaaata 5501456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 44397446 - 44397540
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttga-----ggttgtgcccaaccaa 437  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| ||  | |||||||||||||||||||     ||||||||||||||||    
T  44397446 aagtgatgtgactaaattatttctcttttaaattttatcattcaagtgagtatgtctaaatacttttgatttgatttggggttgtgcccaaccaa 44397540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 5968422 - 5968381
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatt 389  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  5968422 aagtaatgtgattaaattatttctcttttaaattttatcatt 5968381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 12296497 - 12296457
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcat 388  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  12296497 aagtgatgtgactaaattatttttcgtttaaattttatcat 12296457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 30785534 - 30785494
Alignment:
Q  357 gactaaattatttctcttttaaattttatcatttacgtgtg 397  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  30785534 gactaaattatttttcttttaaattttatcatttatgtgtg 30785494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 5254975 - 5255058
Alignment:
Q  351 tgatgtgact-aaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaa 433  Q
    |||||||||| |||||||||||||||||||||||  |||||| ||||||||    |||||  ||||||||| ||||||| ||||    
T  5254975 tgatgtgacttaaattatttctcttttaaatttttacatttatgtgtgtgcattcaaataaatttgatttggggttgtgtccaa 5255058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 45630234 - 45630195
Alignment:
Q  357 gactaaattatttctcttttaaattttatcatttacgtgt 396  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  45630234 gactaaattatttctcttataaattttatcatttatgtgt 45630195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 9088137 - 9088225
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaacca 436  Q
    |||| ||||||||||| ||||||||||||||||||||||||| | ||  ||| | |||||||||||||||||| ||||||||| |||||    
T  9088137 aagtaatgtgactaaactatttctcttttaaattttatcattcaagtaagtgtgtctaaatacttttgatttggggttgtgccgaacca 9088225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 428
Target Start/End: Complemental strand, 22227049 - 22226976
Alignment:
Q  353 atgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtg 428  Q
    |||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||  |||||||    
T  22227049 atgtgactaaattatttctcttttaaattttatcattta--tatgtgtgcctaaatacttttgatttagggttgtg 22226976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 31012636 - 31012548
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaaccaagt 439  Q
    |||||||||||||||||||||||||||| ||||| ||| || ||||||  ||| |||||||||||||||| ||||||| ||||| ||||    
T  31012636 tgatgtgactaaattatttctcttttaagttttaccatatatgtgtgtttgcccaaatacttttgatttggggttgtgtccaactaagt 31012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 23775261 - 23775327
Alignment:
Q  373 ttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaaccaagt 439  Q
    ||||||||||||||||||||||  |||   |||||||| ||||||||| ||||||||||||||||||    
T  23775261 ttttaaattttatcatttacgttagtgtatctaaatacatttgatttggggttgtgcccaaccaagt 23775327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 5579817 - 5579780
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcat 388  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5579817 tgatgtgactaaattatttctcttttaaattttatcat 5579780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 50116311 - 50116353
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcattt 390  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  50116311 aagtgttgtgattaaattatttctcttttaaattttatcattt 50116353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 17056022 - 17056071
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtg 397  Q
    ||||| || ||||||||||||| ||||||||||||||||||||| |||||    
T  17056022 aagtgttgagactaaattatttttcttttaaattttatcatttatgtgtg 17056071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 53718271 - 53718352
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgc 429  Q
    ||||||||||| ||||||||||||||||||||||||| | |||| || ||     | ||||||||||||||||| |||||||    
T  53718271 aagtgatgtgattaaattatttctcttttaaattttaccgtttatgtatgcatatccaaatacttttgatttgaagttgtgc 53718352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 9290208 - 9290164
Alignment:
Q  356 tgactaaattatttctcttttaaattttatcatttacgtgtgtgc 400  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||    
T  9290208 tgactacattatttctcttttaagttttatcatttatgtgtgtgc 9290164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 391
Target Start/End: Original strand, 53963384 - 53963415
Alignment:
Q  360 taaattatttctcttttaaattttatcattta 391  Q
    ||||||||||||||||||||||||||||||||    
T  53963384 taaattatttctcttttaaattttatcattta 53963415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 390
Target Start/End: Original strand, 45652127 - 45652157
Alignment:
Q  360 taaattatttctcttttaaattttatcattt 390  Q
    |||||||||||||||||||||||||||||||    
T  45652127 taaattatttctcttttaaattttatcattt 45652157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 13843188 - 13843216
Alignment:
Q  363 attatttctcttttaaattttatcattta 391  Q
    |||||||||||||||||||||||||||||    
T  13843188 attatttctcttttaaattttatcattta 13843216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 28184379 - 28184427
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtg 399  Q
    |||||||| || ||||||| ||||||||||||||||||||  |||||||    
T  28184379 tgatgtgattatattatttttcttttaaattttatcatttttgtgtgtg 28184427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 35298245 - 35298281
Alignment:
Q  364 ttatttctcttttaaattttatcatttacgtgtgtgc 400  Q
    |||||||||||||||||||||||| | ||||||||||    
T  35298245 ttatttctcttttaaattttatcaataacgtgtgtgc 35298281  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 44058235 - 44058309
Alignment:
Q  357 gactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaa 433  Q
    |||||||||||||| |||||||||||||| ||| |  |||||||||||||||||||||||||||  |||||||||||    
T  44058235 gactaaattatttcccttttaaattttattattaa--tgtgtgcgcctaaatacttttgatttggagttgtgcccaa 44058309  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 48217318 - 48217359
Alignment:
Q  357 gactaaattatttctcttttaaattttatcatttacgtgtgt 398  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  48217318 gactaaattatttctcttataaattttatcatttatgtgtgt 48217359  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 427
Target Start/End: Complemental strand, 23615497 - 23615426
Alignment:
Q  355 gtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgt 427  Q
    ||||||||||||||| ||||||||||||||||||| |||||  ||   ||||||| |||| ||||||||||||    
T  23615497 gtgactaaattattt-tcttttaaattttatcattcacgtgaatgtatctaaatattttttatttgaggttgt 23615426  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 23646791 - 23646707
Alignment:
Q  355 gtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaaccaagt 439  Q
    ||||||||||||||| || |||||||||||||||| || ||  ||   ||||||| ||||||||||  |||||| ||||||||||    
T  23646791 gtgactaaattatttttcatttaaattttatcattcacatgaatgtatctaaatatttttgatttggagttgtgtccaaccaagt 23646707  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 391
Target Start/End: Complemental strand, 49208286 - 49208255
Alignment:
Q  360 taaattatttctcttttaaattttatcattta 391  Q
    ||||||||||||||||||||||||||||||||    
T  49208286 taaattatttctcttttaaattttatcattta 49208255  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 427
Target Start/End: Original strand, 32886571 - 32886648
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgt 427  Q
    ||||||||||||| || |||||||| |||||||||||||||||  ||||||| | | |||||||||||||||||||||||    
T  32886571 aagtgatgtgacttaactatttctcatttaaattttatcattt--gtgtgtgtgtccaaatacttttgatttgaggttgt 32886648  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 13601344 - 13601270
Alignment:
Q  350 gtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttg 426  Q
    ||||||||| |||||||||||| |||||||||||||||||  | ||||||  | ||||||||||| |||||| ||||    
T  13601344 gtgatgtgagtaaattatttcttttttaaattttatcatt--catgtgtgtacttaaatactttttatttgatgttg 13601270  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 15372160 - 15372090
Alignment:
Q  362 aattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaac 434  Q
    |||||||| || |||||||||||||||||| |||||||  |  ||||||||||| |||||| |||||||||||    
T  15372160 aattatttttcctttaaattttatcatttatgtgtgtgttc--aaatacttttgttttgagcttgtgcccaac 15372090  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 391
Target Start/End: Original strand, 38611346 - 38611377
Alignment:
Q  360 taaattatttctcttttaaattttatcattta 391  Q
    ||||||||||||||||||||||||||||||||    
T  38611346 taaattatttctcttttaaattttatcattta 38611377  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 383
Target Start/End: Complemental strand, 22358938 - 22358908
Alignment:
Q  353 atgtgactaaattatttctcttttaaatttt 383  Q
    |||||||||||||||||||||||||||||||    
T  22358938 atgtgactaaattatttctcttttaaatttt 22358908  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 26911233 - 26911295
Alignment:
Q  355 gtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgattt 419  Q
    |||||| |||||||| ||||||||||||||| |||||  |||||| | | |||||||||||||||    
T  26911233 gtgacttaattatttatcttttaaattttattattta--tgtgtgtgtcaaaatacttttgattt 26911295  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 43449623 - 43449664
Alignment:
Q  350 gtgatgtgactaaattatttctcttttaaattttatcattta 391  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  43449623 gtgatttgactaaattatttctattttaaattttattattta 43449664  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 44985587 - 44985620
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaatttta 384  Q
    ||||||||||||||||||| ||||||||||||||    
T  44985587 tgatgtgactaaattatttttcttttaaatttta 44985620  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 51818465 - 51818414
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtg 399  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  51818465 aagtgatgtgattaaattatttttcttttaaattttatcatttatgtgtgtg 51818414  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 48923489 - 48923529
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcattta 391  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  48923489 tgatgtgagtaaattatttctcttttatattttatcattta 48923529  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 19279699 - 19279661
Alignment:
Q  353 atgtgactaaattatttctcttttaaattttatcattta 391  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  19279699 atgtgattaaattatttctcttttaaatttaatcattta 19279661  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 389
Target Start/End: Original strand, 47896465 - 47896494
Alignment:
Q  360 taaattatttctcttttaaattttatcatt 389  Q
    ||||||||||||||||||||||||||||||    
T  47896465 taaattatttctcttttaaattttatcatt 47896494  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 437
Target Start/End: Original strand, 55159556 - 55159633
Alignment:
Q  360 taaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaaccaa 437  Q
    |||||||||| |||||||||||||||| || || || |||    ||||||||||||||||| | ||||||| ||||||    
T  55159556 taaattatttttcttttaaattttatcgttcacctgagtgtatttaaatacttttgatttgggtttgtgccgaaccaa 55159633  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 24619405 - 24619364
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatt 389  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  24619405 aagtgatgtaactaaattatttctcttttaaattttatcatt 24619364  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 8438948 - 8438989
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatt 389  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  8438948 aagtgatgtgattaaattatttctcttttaatttttatcatt 8438989  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 1350566 - 1350497
Alignment:
Q  348 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgattt 419  Q
    ||||||| ||| | |||||| |||| ||||||||||||||||||  ||| || | |||||||||||||||||    
T  1350566 aagtgatatgatttaattatatctcatttaaattttatcattta--tgtatgtgtctaaatacttttgattt 1350497  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 427
Target Start/End: Complemental strand, 24980238 - 24980167
Alignment:
Q  355 gtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgt 427  Q
    |||||||||||| |||||||| ||||||||||||| |  || ||| | ||||||||||||||| || ||||||    
T  24980238 gtgactaaattacttctcttt-aaattttatcattcatatgagtgtgtctaaatacttttgatatggggttgt 24980167  T

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Target: scaffold0504 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 6903 - 6846
Alignment:
Q  351 tgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaat 408  Q
    |||||||||||| |||||| ||||| || |||| | ||||| ||||||||||||||||    
T  6903 tgatgtgactaatttatttatctttaaatttttttaatttatgtgtgtgcgcctaaat 6846  T

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