View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_53 (Length: 448)
Name: NF3918_low_53
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_53 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 6697848 - 6698285
Alignment:
| Q |
15 |
cataggacttgggtggggtctgtcccaaacttggtaaacttgtctttattgaatgactctgttcctgttttcattacctttacttcaatcgtgcataaac |
114 |
Q |
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| T |
6697848 |
cataggacttgggtggggtctgtcccaaacttggtaaacttgtctttattgaatgactctgttcctgttttcattacctttacttcaatcgtgcataaac |
6697947 |
T |
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| Q |
115 |
atttaaacacccatttgtcaccccaaaacagttaaggataccccaaacacaccattggatttgaaaatcattgtgcaagcttttgattgtaaccaactcc |
214 |
Q |
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| T |
6697948 |
atttaaacacccatttgtcaccccaaaacagttaaggataccccaaacacaccattggatttgaaaatcattgtgcaagcttttgattgtaaccaactcc |
6698047 |
T |
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| Q |
215 |
atgcnnnnnnnttaatttgttgatttccacaccctccggtgtgtaatcattagttaacaagaaaaattatcaaaaaagattaatt----attattagtta |
310 |
Q |
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| T |
6698048 |
atgcaaaaaaattaatttgttgatttccacaccctccagtgtgtaatcattagttaacaagaaaaattatcaaaaaagattaattattaattattagtta |
6698147 |
T |
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| Q |
311 |
gtcaaacaccgcttaaaaatccaaacacgggttctctacataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatcta |
410 |
Q |
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| T |
6698148 |
gtcaaacaccgcttaaaaatccaaacacgggttctctacataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatcta |
6698247 |
T |
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| Q |
411 |
aaaatactaattaaacattgatgaagatatgattcttc |
448 |
Q |
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| T |
6698248 |
aaaatactaattaaacattgatgaagatatgattcttc |
6698285 |
T |
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