View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_57 (Length: 443)

Name: NF3918_low_57
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_57
NF3918_low_57
[»] chr1 (13 HSPs)
chr1 (303-434)||(12706456-12706587)
chr1 (21-92)||(12920808-12920877)
chr1 (146-184)||(32007598-32007636)
chr1 (145-185)||(34707864-34707904)
chr1 (146-193)||(13590132-13590179)
chr1 (146-193)||(32002881-32002928)
chr1 (143-196)||(2596928-2596982)
chr1 (145-182)||(6803798-6803835)
chr1 (21-78)||(12901888-12901945)
chr1 (145-182)||(29739358-29739395)
chr1 (146-182)||(1605418-1605454)
chr1 (146-182)||(8736457-8736493)
chr1 (146-182)||(40735008-40735044)
[»] chr6 (6 HSPs)
chr6 (40-92)||(21116812-21116864)
chr6 (144-182)||(33976264-33976302)
chr6 (147-184)||(1146507-1146544)
chr6 (146-182)||(2655030-2655066)
chr6 (146-182)||(14296960-14296996)
chr6 (146-182)||(16390451-16390487)
[»] scaffold0524 (1 HSPs)
scaffold0524 (145-185)||(1255-1295)
[»] chr7 (8 HSPs)
chr7 (146-182)||(18773759-18773795)
chr7 (146-196)||(40808148-40808198)
chr7 (144-193)||(2916021-2916070)
chr7 (145-182)||(27833404-27833441)
chr7 (148-184)||(1079693-1079729)
chr7 (145-185)||(14671191-14671231)
chr7 (146-182)||(19416536-19416572)
chr7 (145-193)||(35396654-35396702)
[»] chr5 (8 HSPs)
chr5 (146-193)||(37054260-37054308)
chr5 (143-185)||(1358495-1358537)
chr5 (147-185)||(32559327-32559365)
chr5 (144-182)||(42817115-42817153)
chr5 (146-182)||(6424906-6424942)
chr5 (146-182)||(10704334-10704370)
chr5 (146-190)||(18877766-18877810)
chr5 (146-182)||(34191455-34191491)
[»] chr3 (5 HSPs)
chr3 (146-182)||(34442450-34442486)
chr3 (146-191)||(32037026-32037071)
chr3 (146-182)||(7464494-7464530)
chr3 (146-182)||(25340927-25340963)
chr3 (146-193)||(25727958-25728006)
[»] chr8 (5 HSPs)
chr8 (146-193)||(12714362-12714409)
chr8 (143-182)||(24838173-24838212)
chr8 (150-193)||(28580970-28581014)
chr8 (150-193)||(39138989-39139033)
chr8 (150-190)||(45049601-45049641)
[»] chr2 (6 HSPs)
chr2 (146-179)||(6765632-6765665)
chr2 (146-183)||(36474784-36474821)
chr2 (145-185)||(3113727-3113767)
chr2 (146-182)||(21929492-21929528)
chr2 (146-182)||(30089071-30089107)
chr2 (146-182)||(30125675-30125711)
[»] chr4 (8 HSPs)
chr4 (146-182)||(9946449-9946485)
chr4 (146-193)||(23619123-23619171)
chr4 (146-182)||(30780151-30780187)
chr4 (146-182)||(37872504-37872540)
chr4 (146-182)||(43499613-43499649)
chr4 (146-182)||(43722787-43722823)
chr4 (146-193)||(47015559-47015607)
chr4 (146-182)||(49952572-49952608)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 303 - 434
Target Start/End: Complemental strand, 12706587 - 12706456
Alignment:
Q  303 agcctatcttatcacaatgctttgtcatacaatagtttttgcattttattaatccttcagatattgcatatgcaaaaacaaacatactcatcgccattat 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12706587 agcctatcttatcacaatgctttgtcatacaatagtttttgcattttattaatccttcagatattgcatgtgcaaaaacaaacatactcatcgccattat 12706488  T
Q  403 catgaccatagtcataacaacatttttcatct 434  Q
    ||||||||||||||||||||||||||||||||    
T  12706487 catgaccatagtcataacaacatttttcatct 12706456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 12920877 - 12920808
Alignment:
Q  21 aattcaaaccatgaacacgtgattttgaacatcaatcatctcaaacaaacaagtgtctccaatcttcacatt 92  Q
    |||| ||||| ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  12920877 aattgaaaccttgaacacatgattttg--catcaatcatctcaaacaaacaagtgtctccaatcttcacatt 12920808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 32007636 - 32007598
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaatc 184  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  32007636 ggacaatgcataaaatatacaaggtccggggttcaaatc 32007598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 34707904 - 34707864
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaatcc 185  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  34707904 aggacaatgcataaaatatgtaaggtcaggggttcaaatcc 34707864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 13590132 - 13590179
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaatccgaccacca 193  Q
    |||||||||||||||||| |||||| ||| ||||||| ||||||||||    
T  13590132 ggacaatgcataaaatatgtaaggttcggagttcaaacccgaccacca 13590179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 32002928 - 32002881
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaatccgaccacca 193  Q
    |||||||| |||| ||||||||||| |||||||| |||||||||||||    
T  32002928 ggacaatgtataatatatataaggttcggggttcgaatccgaccacca 32002881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 2596982 - 2596928
Alignment:
Q  143 ttaggacaatgcataaaatatataaggtccggggttcaaa-tccgaccaccaaaa 196  Q
    |||| ||||||||||||||||  ||||||||||||||||| ||||||| ||||||    
T  2596982 ttagaacaatgcataaaatatgcaaggtccggggttcaaactccgacctccaaaa 2596928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 6803798 - 6803835
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||| || ||||||||||||||||||||||||||||    
T  6803798 aggacagtgtataaaatatataaggtccggggttcaaa 6803835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 12901888 - 12901945
Alignment:
Q  21 aattcaaaccatgaacacgtgattttgaacatcaatcatctcaaacaaacaagtgtct 78  Q
    |||| ||||| ||||||| | ||||||  ||||||||||||||||||| |||||||||    
T  12901888 aattgaaaccttgaacacattattttgcgcatcaatcatctcaaacaagcaagtgtct 12901945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 29739358 - 29739395
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||||||||||||||  |||||||||||||||||    
T  29739358 aggacaatgcataaaatatgcaaggtccggggttcaaa 29739395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 1605418 - 1605454
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1605418 ggacaatgcataaaatatgcaaggtccggggttcaaa 1605454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 8736457 - 8736493
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||  |||||||||||||||||    
T  8736457 ggacaatgcataaaatatgcaaggtccggggttcaaa 8736493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 40735044 - 40735008
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||||||||||||| |||||| |||||||||||    
T  40735044 ggacaatgcataaaatatgtaaggttcggggttcaaa 40735008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 21116864 - 21116812
Alignment:
Q  40 tgattttgaacatcaatcatctcaaacaaacaagtgtctccaatcttcacatt 92  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21116864 tgattttgaacatcaatcaactcaaacaaacaagtgtctccaatcttcacatt 21116812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 33976264 - 33976302
Alignment:
Q  144 taggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  33976264 taggacaatgcataaaatatgcaaggtccggggttcaaa 33976302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 1146544 - 1146507
Alignment:
Q  147 gacaatgcataaaatatataaggtccggggttcaaatc 184  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  1146544 gacaatgcataaaatatataaggttcggtgttcaaatc 1146507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 2655066 - 2655030
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||||||||||||| |||| |||||||||||||    
T  2655066 ggacaatgcataaaatatgtaagatccggggttcaaa 2655030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 14296996 - 14296960
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  14296996 ggacaatacataaaatatgtaaggtccggggttcaaa 14296960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 16390451 - 16390487
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  16390451 ggacaatgcataatatatgtaaggtccggggttcaaa 16390487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 1255 - 1295
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaatcc 185  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  1255 aggacaatgcataatctatataaggtccggggttcaaatcc 1295  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 18773795 - 18773759
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||||||||||||| ||||||||||||||||||    
T  18773795 ggacaatgcataaaatatgtaaggtccggggttcaaa 18773759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 40808198 - 40808148
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaatccgaccaccaaaa 196  Q
    ||||| ||||||||||||  ||||||||||||||||| ||| |||||||||    
T  40808198 ggacagtgcataaaatatgcaaggtccggggttcaaacccgcccaccaaaa 40808148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 2916021 - 2916070
Alignment:
Q  144 taggacaatgcataaaatatataaggtccggggttcaaatccgaccacca 193  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||| ||||||    
T  2916021 taggacaatgtataatatatacaaggtccggggttcaaacccggccacca 2916070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 27833441 - 27833404
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  27833441 aggacaatgcataatatatgtaaggtccggggttcaaa 27833404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 1079729 - 1079693
Alignment:
Q  148 acaatgcataaaatatataaggtccggggttcaaatc 184  Q
    ||||||||||||||||  |||||||||||||||||||    
T  1079729 acaatgcataaaatatgcaaggtccggggttcaaatc 1079693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 14671191 - 14671231
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaatcc 185  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  14671191 aggacaatgcataatatatacaaggtccggggttcgaatcc 14671231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 19416536 - 19416572
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||  |||||||||||||||||    
T  19416536 ggacaatgcataaaatatgcaaggtccggggttcaaa 19416572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 35396654 - 35396702
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaatccgaccacca 193  Q
    |||| |||||||||||||||||| ||  |||||||||||||| ||||||    
T  35396654 aggataatgcataaaatatataacgtttggggttcaaatccggccacca 35396702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 37054308 - 37054260
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa-tccgaccacca 193  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  37054308 ggacaatgcataatatatataaggttcggggttcaaactccgaccacca 37054260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 1358537 - 1358495
Alignment:
Q  143 ttaggacaatgcataaaatatataaggtccggggttcaaatcc 185  Q
    ||||||||||||||||||||| |||||||  ||||||||||||    
T  1358537 ttaggacaatgcataaaatatgtaaggtctagggttcaaatcc 1358495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 32559327 - 32559365
Alignment:
Q  147 gacaatgcataaaatatataaggtccggggttcaaatcc 185  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  32559327 gacaatgcataaaatatgtaaggtctggggttcaaatcc 32559365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 42817153 - 42817115
Alignment:
Q  144 taggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  42817153 taggacaatgcataatatatacaaggtccggggttcaaa 42817115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 6424942 - 6424906
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  6424942 ggacaatgcataatatatacaaggtccggggttcaaa 6424906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 10704370 - 10704334
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||  |||||||||||||||||    
T  10704370 ggacaatgcataaaatatgcaaggtccggggttcaaa 10704334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 18877766 - 18877810
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaatccgacca 190  Q
    |||||||||||||||||| |||||||| |||||| || |||||||    
T  18877766 ggacaatgcataaaatatgtaaggtccagggttcgaacccgacca 18877810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 34191455 - 34191491
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||  |||||||||||||||||    
T  34191455 ggacaatgcataaaatatgcaaggtccggggttcaaa 34191491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 34442486 - 34442450
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||||||||||||| ||||||||||||||||||    
T  34442486 ggacaatgcataaaatatgtaaggtccggggttcaaa 34442450  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 32037071 - 32037026
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaatccgaccac 191  Q
    ||||||||||||||||||  | ||| ||||||||||||||||||||    
T  32037071 ggacaatgcataaaatatgcagggtacggggttcaaatccgaccac 32037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 7464530 - 7464494
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7464530 ggacaatgcataatatatgtaaggtccggggttcaaa 7464494  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 25340963 - 25340927
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||  |||||||||||||||||    
T  25340963 ggacaatgcataaaatatgcaaggtccggggttcaaa 25340927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 25728006 - 25727958
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaat-ccgaccacca 193  Q
    ||||||||||||| ||||  |||||||||||||||||| ||||||||||    
T  25728006 ggacaatgcataatatatgcaaggtccggggttcaaatcccgaccacca 25727958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 12714409 - 12714362
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaatccgaccacca 193  Q
    ||||||||||||| ||||  ||||| ||||||||||||||||||||||    
T  12714409 ggacaatgcataatatatgcaaggttcggggttcaaatccgaccacca 12714362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 24838212 - 24838173
Alignment:
Q  143 ttaggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  24838212 ttaggacaatgcataaaatatgcaaggtccggggttcaaa 24838173  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 28580970 - 28581014
Alignment:
Q  150 aatgcataaaatatataaggtccggggttcaaat-ccgaccacca 193  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||    
T  28580970 aatgcataaaatatgtaaggttcggggttcaaatcccgaccacca 28581014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 39139033 - 39138989
Alignment:
Q  150 aatgcataaaatatataaggtccggggttcaaa-tccgaccacca 193  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||    
T  39139033 aatgcataaaatatgtaaggttcggggttcaaactccgaccacca 39138989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 45049601 - 45049641
Alignment:
Q  150 aatgcataaaatatataaggtccggggttcaaatccgacca 190  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  45049601 aatgcataaaatatgtaaggttcggggttcaaacccgacca 45049641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 6765632 - 6765665
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttc 179  Q
    |||||||||||||||||| |||||||||||||||    
T  6765632 ggacaatgcataaaatatgtaaggtccggggttc 6765665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 36474784 - 36474821
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaat 183  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  36474784 ggacaatgcataaaatatgcaaggtccggggttcaaat 36474821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 3113767 - 3113727
Alignment:
Q  145 aggacaatgcataaaatatataaggtccggggttcaaatcc 185  Q
    |||||||||||||||||||  |||||||||| |||||||||    
T  3113767 aggacaatgcataaaatatgcaaggtccgggattcaaatcc 3113727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 21929492 - 21929528
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  21929492 ggacaatgcataaaatatacaaggtcaggggttcaaa 21929528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 30089071 - 30089107
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  30089071 ggacaatgcataatatatacaaggtccggggttcaaa 30089107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 30125675 - 30125711
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  30125675 ggacaatgcataatatatacaaggtccggggttcaaa 30125711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 9946449 - 9946485
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||  |||||||||||||||||    
T  9946449 ggacaatgcataaaatatgcaaggtccggggttcaaa 9946485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 23619123 - 23619171
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa-tccgaccacca 193  Q
    ||||||||||||||||||| || || ||||||||||| |||||||||||    
T  23619123 ggacaatgcataaaatatacaaagttcggggttcaaattccgaccacca 23619171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 30780151 - 30780187
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  30780151 ggacaatgcataaaatatataaggttcgggattcaaa 30780187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 37872540 - 37872504
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  37872540 ggacaatgcataatatatataaggtccggggtacaaa 37872504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 43499613 - 43499649
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    |||||||| |||||||||| |||||||||||||||||    
T  43499613 ggacaatgtataaaatatacaaggtccggggttcaaa 43499649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 43722787 - 43722823
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  43722787 ggacaatgcataatatatgtaaggtccggggttcaaa 43722823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 47015607 - 47015559
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa-tccgaccacca 193  Q
    ||||||||||||| ||||| |||||| |||||||||| |||||||||||    
T  47015607 ggacaatgcataatatatacaaggtctggggttcaaactccgaccacca 47015559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 49952608 - 49952572
Alignment:
Q  146 ggacaatgcataaaatatataaggtccggggttcaaa 182  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  49952608 ggacaatgcataatatatgtaaggtccggggttcaaa 49952572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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