View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_58 (Length: 441)
Name: NF3918_low_58
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 31058501 - 31058076
Alignment:
| Q |
1 |
tgtctttcttcaactggtggaactttggattgtgctttgcagtgctgattagttccacagtgattgtatatgttcaagactttgtcaactggggagttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058501 |
tgtctttcttcaactggtggaactttggattgtgctttgcagtgctgattagttccacagtgattgtatatgttcaagactttgtcaactggggagttgc |
31058402 |
T |
|
| Q |
101 |
tactctaatacttacagcttttatggctattgctgtcataactttctgtgtaggtaagcccttatataggtaccggaagccggaaggaaaccctctactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31058401 |
tactctaatacttacagcttttatggctattgctgtcataactttctgtgtaggtaagcccttgtatagataccggaagccggaaggaaaccctctactg |
31058302 |
T |
|
| Q |
201 |
ccaattttacaggtccttgttgcagccataagaaaaagggatttatgttgtccttcaaatcctgctttattgtatgagcttcaaatttcagaccattctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058301 |
ccaattttacaggtccttgttgcagccataagaaaaagggatttatgttgtccttcaaatcctgctttattgtatgagcttcaaatttcagaccattctc |
31058202 |
T |
|
| Q |
301 |
aaggaaggcttctaagccatactagcagattcaggtatcacacatacaccttatccaactgagactaattgttagaattagggatgagaatagacaaggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058201 |
aaggaaggcttctaagccatactagcagattcaggtatcacacatacaccttatccaactgagactaattgttagaattagggatgagaatagacaaggt |
31058102 |
T |
|
| Q |
401 |
cgtccatagttagaattcaaagatat |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31058101 |
cgtccatagttagaattcaaagatat |
31058076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 31065344 - 31065018
Alignment:
| Q |
1 |
tgtctttcttcaactggtggaactttggattgtgctttgcagtgctgattagttccacagtgattgtatatgttcaagactttgtcaactggggagttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| |||| || || | ||||||||||| ||||| |||||| ||| | ||||||||| | |
|
|
| T |
31065344 |
tgtctttcttcaactggtggaactttgcattgtgttttgcattgcttcttggtgcaacagtgattgtttatgtccaagacaatgttagttggggagtttc |
31065245 |
T |
|
| Q |
101 |
tactctaatacttacagcttttatggctat-tgctgtcataactttctgtgtaggtaagcccttatataggtaccggaagccggaaggaaaccctctact |
199 |
Q |
| |
|
| |||||| || ||| | |||||||| | ||| ||||| |||||| | |||| || || || |||||||| | | ||| |||||||| || || |
|
|
| T |
31065244 |
ttgtctaattctcacaattcttatggctctatgc-atcatagctttctatctagggaaacctttttataggtatagaaggccagaaggaaatactttaaa |
31065146 |
T |
|
| Q |
200 |
gccaattttacaggtccttgttgcagccataagaaaaagggatttatgttgtccttcaaatcctgctttattgtatgagcttcaaatttcagaccattct |
299 |
Q |
| |
|
|||||| ||||||| || |||||||| ||||| ||||| | |||| |||||||||||||||| ||| || ||||| ||| || ||||| | ||| |
|
|
| T |
31065145 |
accaattatacaggtactagttgcagctataaggaaaagaaaattatcctgtccttcaaatcctgatttgttctatgaaattccaaagtcagataagtct |
31065046 |
T |
|
| Q |
300 |
caaggaaggcttctaagccatactagca |
327 |
Q |
| |
|
||||||||||||||| || ||||||||| |
|
|
| T |
31065045 |
caaggaaggcttctatgcaatactagca |
31065018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 31082392 - 31082066
Alignment:
| Q |
1 |
tgtctttcttcaactggtggaactttggattgtgctttgcagtgctgattagttccacagtgattgtatatgttcaagactttgtcaactggggagttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||| |||| || || | ||||||||||| ||||| |||||| ||| | |||||||| ||| |
|
|
| T |
31082392 |
tgtctttcttcaactggtggaactttgcactgtgttttgcattgcttcttggtgcaacagtgattgtttatgtccaagacaatgttagctggggagctgc |
31082293 |
T |
|
| Q |
101 |
tactctaatacttacagcttttatggctattgctgtcataactttctgtgtaggtaagcccttatataggtaccggaagccggaaggaaaccctctactg |
200 |
Q |
| |
|
|| ||| || || ||| | |||||||| | | ||||| | || | ||| || ||||| || |||||||| | | ||| ||||||| || || |
|
|
| T |
31082292 |
tagtcttattctcacaattcttatggctttatgtatcatagcattttatgtggggaagcctttttataggtatagaaggccacaaggaaatactttaaaa |
31082193 |
T |
|
| Q |
201 |
ccaattttacaggtccttgttgcagccataagaaaaagggatttatgttgtccttcaaatcctgctttattgtatgagcttcaaatttcagaccattctc |
300 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| || || | |||| |||||| ||||||||| ||||||||||||| ||| || ||||| | || | |
|
|
| T |
31082192 |
ccaattttacaggtactagttgcagctataaggaagagaaaattatcttgtccctcaaatccttctttattgtatgaagttccaaagtcagataagtccc |
31082093 |
T |
|
| Q |
301 |
aaggaaggcttctaagccatactagca |
327 |
Q |
| |
|
|||||||||||||| || |||||||| |
|
|
| T |
31082092 |
aaggaaggcttctatgcactactagca |
31082066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University