View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_60 (Length: 432)
Name: NF3918_low_60
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 41380191 - 41380597
Alignment:
| Q |
10 |
acatcatcaacaaaattacaaaacctagctcatataatgtatctgtagtttaattttctcatctatttttacactttctaagttttgtacttcattcaag |
109 |
Q |
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| T |
41380191 |
acatcttcaacaaaattacaaaacctagctcatataatgtatctgtagtttaattttctcatccatttttacactttctaagttttgtacttcattcaag |
41380290 |
T |
|
| Q |
110 |
catctattatagatgctatacaaacaccaaccaaagtctcaccaaaaaa-gcttcacttaaaacatttaagcaagnnnnnnnnntcattgaatcttccac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41380291 |
catctattatagatgctatacaaacaccaaccaaagtctccccaaaaaaagcttcacttaaaacatttaagcaagaaaaaaaaatcattgaatcttccac |
41380390 |
T |
|
| Q |
209 |
acacaaaa-atatcattgaatagaagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatagatagtttattggc |
307 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380391 |
acacaaaaaatatcattgaatacaagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatagatagtttattggc |
41380490 |
T |
|
| Q |
308 |
agcaaataaatcaatcatagagaaaatagacatcatcattgccaaggagtttaagagtaaaactggtaggtcttggcttcaagtataatactcctcaatg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
41380491 |
agcaaataaatcaatcatagagaaaatagacatcatcattgtcaaggagtttaagagtaaaactggtaggacttggcttcaaggataatactcctcaatg |
41380590 |
T |
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| Q |
408 |
ctccaat |
414 |
Q |
| |
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||||||| |
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| T |
41380591 |
ctccaat |
41380597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 8043819 - 8043677
Alignment:
| Q |
193 |
tcattgaatcttccacacacaaaaa-tatcattgaatagaagcaatttccttcattt-gttcttcaattgaaactcaattatgtacattgaaattggaaa |
290 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| | |||||||||||| ||||||||||||||||| ||| |
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| T |
8043819 |
tcattgaatcttccacacacaaaaaatatcattgaatagaaacaatttccttcattttgttctaccattgaaactcaaatatgtacattgaaattgaaaa |
8043720 |
T |
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| Q |
291 |
atagatagtttattggcagcaaataaatcaatcatagagaaaa |
333 |
Q |
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| T |
8043719 |
atagatagttcattggcagaaaataaacaaatcatagagaaaa |
8043677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 8033814 - 8033741
Alignment:
| Q |
260 |
gaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaataaatcaatcatagagaaaa |
333 |
Q |
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| T |
8033814 |
gaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaataaataaatcatagagaaaa |
8033741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 7970105 - 7970159
Alignment:
| Q |
360 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaat |
414 |
Q |
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| T |
7970105 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaat |
7970159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 8033668 - 8033614
Alignment:
| Q |
360 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaat |
414 |
Q |
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| T |
8033668 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaat |
8033614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 8043604 - 8043550
Alignment:
| Q |
360 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaat |
414 |
Q |
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| T |
8043604 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaat |
8043550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 8034027 - 8033905
Alignment:
| Q |
10 |
acatcatcaacaaaattacaaaacctagctca----tataatgtatctgtagtttaattttctcatctattttt---acactttctaagttttgtacttc |
102 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| | ||||| | ||||||||| ||||||||||| |
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| T |
8034027 |
acatcttcaacaaaattacaaaacctagctcatatatataatgtatctgtagcttaa-tttctcatttttttttttaatactttctaa-ttttgtacttc |
8033930 |
T |
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| Q |
103 |
attcaagcatctattatagatgcta |
127 |
Q |
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| T |
8033929 |
aaccaagcatctattatagatgcta |
8033905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 8043995 - 8043890
Alignment:
| Q |
18 |
aacaaaattacaaaacctagctcatataatgtatctgtagtttaa-ttttctcatctatttttacactttctaagttttgtacttcattcaagcatctat |
116 |
Q |
| |
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|||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||| |||| | | |||||| || |||||| ||| |||||||||||| |
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| T |
8043995 |
aacaaaattataaaacctaactcatattatgtatctgtagtttaatttttctcatcctttttcatagtttctatgtgttgtacatcaatcaagcatctat |
8043896 |
T |
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| Q |
117 |
tataga |
122 |
Q |
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|||||| |
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| T |
8043895 |
tataga |
8043890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 7969753 - 7969879
Alignment:
| Q |
10 |
acatcatcaacaaaattacaaaacctagctc----atataatgtatctgtagtttaattttctcatcta-------tttttacactttctaagttttgta |
98 |
Q |
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| T |
7969753 |
acatcttcaacaaaattacaaaacctagctcatatatataatgtatctgtagcttaa-tttctcatatatatatttttttaatactttctaa-ttttgta |
7969850 |
T |
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| Q |
99 |
cttcattcaagcatctattatagatgcta |
127 |
Q |
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| T |
7969851 |
cttcaatcaagcatctattatagatgcta |
7969879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 7969970 - 7970065
Alignment:
| Q |
260 |
gaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaata-aatcaatcatagagaaaatagacatcatcattgccaagg |
354 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||| |||| ||| ||||| | || ||||||||||||||| |||||||||| ||||| |
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| T |
7969970 |
gaaactcagttatgtgcattgaaattggaaaatagatagttcattgccagaaaatagagaaaagcatagagaaaatagatatcatcattgtcaagg |
7970065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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