View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_62 (Length: 428)
Name: NF3918_low_62
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_62 |
 | |
|
| [»] scaffold0245 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 1313967 - 1313559
Alignment:
| Q |
1 |
atatttaacaattgaatgcagaaaaacacacgtttaattttattattccccaaatttgagtggaagaaaaaagctaggtattcgatggaatgggatgggg |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1313967 |
atatttaacgattgaatgcagaaaaacacacgtttaattttattattccccaaatttgagtggaagaaaaaagctaggtattcgatggaatgggatgggg |
1313868 |
T |
|
| Q |
101 |
tttgttccatcatatcctattttaaagaattcaactattttatagtttttacgattccatttcatcccgtttgtcaatctaaacacagccttggtatagt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1313867 |
ttcgttccatcatatcctattttaaagaattcaactatggtatagtttttacgattccatttcatcctgtttgtcaatctaaacacagccttggtatagt |
1313768 |
T |
|
| Q |
201 |
gcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttgt |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1313767 |
gcttgcaattttttgggcatagaccttctagttcccagggaaaaggagctattgtaatctggttcgcactttgaaacattgctatagtgcttggtgttgt |
1313668 |
T |
|
| Q |
301 |
tttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1313667 |
tttaagcattgatgctaacatgatttgttcaggagagttcgtccgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaa |
1313568 |
T |
|
| Q |
401 |
ggaggtaaa |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
1313567 |
ggaggtaaa |
1313559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 200 - 409
Target Start/End: Complemental strand, 1294757 - 1294548
Alignment:
| Q |
200 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1294757 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaacattgctatagtgcttggtgttg |
1294658 |
T |
|
| Q |
300 |
ttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaaga |
399 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
1294657 |
ttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaaga |
1294558 |
T |
|
| Q |
400 |
aggaggtaaa |
409 |
Q |
| |
|
|||||||||| |
|
|
| T |
1294557 |
aggaggtaaa |
1294548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 200 - 409
Target Start/End: Complemental strand, 22667 - 22458
Alignment:
| Q |
200 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22667 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaacattgctatagtgcttggtgttg |
22568 |
T |
|
| Q |
300 |
ttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaaga |
399 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
22567 |
ttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaaga |
22468 |
T |
|
| Q |
400 |
aggaggtaaa |
409 |
Q |
| |
|
|||||||||| |
|
|
| T |
22467 |
aggaggtaaa |
22458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University