View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_65 (Length: 420)
Name: NF3918_low_65
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 30075208 - 30075606
Alignment:
| Q |
19 |
tcctcaacaatctttcactttttgattatgacaagcttcttgaattaaggatcatattttttagattctgatgtttaatcaatgcattgatatgagataa |
118 |
Q |
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| T |
30075208 |
tcctcaacaatcttccactttttgattatgacaagcttcttgaattaaggatcatattttttagattctgatgtttaatcaatgcattgatatgagataa |
30075307 |
T |
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| Q |
119 |
atgacctttaaacttattccataatcaaaattgagaatttttataaacaaaaactccccctcatgattagaaataaaattatgcaaaaattaaaattgaa |
218 |
Q |
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| T |
30075308 |
atgacctttaaacttattccataatcataattgagaattttaataaacaaaaactccccctcatgattagaaataaaattatgcaataattaaaattgaa |
30075407 |
T |
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| Q |
219 |
ccataattgtactttattatttatagtccaaatattacaaaatagcattcatgatgcagatacatggttaaataaatagttgatcttaacaacgatgata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30075408 |
ccataattgtactttattatttatagtccaaatattacaaaatagcattcatgatgcagatacatggttaaaaaaatagttgatcttaacaacgatgata |
30075507 |
T |
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| Q |
319 |
gcaaacatcattttttactagccaaaataagatcataataggactataatgccaagnnnnnnnnnattcataaccaaaaaattgatcctttgcttctcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
30075508 |
gcaaacatcattttttactagccaaaataagatcataataggactataatgccaagttttttttcattcataaccaaaaaattgatccttttcttctcc |
30075606 |
T |
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