View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_68 (Length: 417)
Name: NF3918_low_68
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 2919146 - 2919525
Alignment:
| Q |
20 |
actattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaattagggaattaggga |
119 |
Q |
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| T |
2919146 |
actattacaatgtagtgcacacatattatataactcaagcacaaggttcaatcctagcttatactaagcattacccttaatcaaatt--------aggga |
2919237 |
T |
|
| Q |
120 |
aggaaaattgaaaatatgggcacagaagccaccccaaagcttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttag |
219 |
Q |
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| T |
2919238 |
aggaaaattgaaaatatgggcacagaagccaccccaaagcttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttag |
2919337 |
T |
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| Q |
220 |
tgaagtcccaagtctataaggcattagtagagtatggttgctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919338 |
tgaagtcccaagtctataaggcattagtagagtatggttgctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcact |
2919437 |
T |
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| Q |
320 |
acaagagctctttgatctccctttagaaaccaagctactcaatgtgtctaagaagccttatcatggttatgttggtcaatatcctatg |
407 |
Q |
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| T |
2919438 |
acaagagctctttgatctccctttagaaaccaagctactcaatgtgtctaagaagccttatcatggttatgttggtcaatatcctatg |
2919525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 2933936 - 2934312
Alignment:
| Q |
20 |
actattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaattagggaattaggga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| |
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| T |
2933936 |
actattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaagcattacccttaatcatatta--------ggga |
2934027 |
T |
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| Q |
120 |
aggaaaattgaaaatatgggcacagaagccaccccaaagcttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttag |
219 |
Q |
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|||| | |||||||||||| ||||| ||| | |||||||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| |
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| T |
2934028 |
aggacaggtgaaaatatgggatcagaacacactcaaaagcttccactaattgacttcaataacctcaactttgaagccaaaaatcccaattgggagttag |
2934127 |
T |
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| Q |
220 |
tgaagtcccaagtctataaggcattagtagagtatggttgctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
2934128 |
tgaagtcccaagtctataaggcattagtagagtatggttgctttgaagcaatttttgataaagttcctttagaccttcgcaaagccatatttacttcaat |
2934227 |
T |
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| Q |
320 |
acaagagctctttgatctccctttagaaaccaagctactcaatgtgtctaagaagccttatcatggttatgttggtcaatatcct |
404 |
Q |
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| ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||| ||| |||||||||||||| |
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| T |
2934228 |
agaagagctctttgatctccctttagagactaagctactcaatgtgtctaataagccttatgatggctatattggtcaatatcct |
2934312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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