View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_69 (Length: 412)
Name: NF3918_low_69
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 36673779 - 36673396
Alignment:
| Q |
14 |
catcaaagggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaat |
113 |
Q |
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| T |
36673779 |
catcaaagggtcaacattgcacttggaatagcaagagggttatcatggctgcatcatagctgtgatttgggcatagtgcattttaatatatgttcagaat |
36673680 |
T |
|
| Q |
114 |
gcatattgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaa |
213 |
Q |
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| T |
36673679 |
gcatattgctagatgagaattttgaacccaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaa |
36673580 |
T |
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| Q |
214 |
ggtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacact |
313 |
Q |
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| T |
36673579 |
ggtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacact |
36673480 |
T |
|
| Q |
314 |
actaatctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgt |
397 |
Q |
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| T |
36673479 |
actaatctatgtggtaaccctttgagtttttataacgtcattgataaatctttgaccggggaaggacttgaaaatgaagtttgt |
36673396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 36676528 - 36676151
Alignment:
| Q |
20 |
agggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaatgcatat |
119 |
Q |
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| T |
36676528 |
agggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatat |
36676429 |
T |
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| Q |
120 |
tgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
219 |
Q |
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| T |
36676428 |
tgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaa |
36676329 |
T |
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| Q |
220 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaat |
319 |
Q |
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| T |
36676328 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaat |
36676229 |
T |
|
| Q |
320 |
ctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgt |
397 |
Q |
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| T |
36676228 |
ctatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggacttgaaaatgaagtttgt |
36676151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 36684201 - 36683823
Alignment:
| Q |
20 |
agggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaatgcatat |
119 |
Q |
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| T |
36684201 |
agggtcaacattgcacttggattagcaagaggattatcatggctccatcatagctgtgatttgggcatagtgcattttaatatatattcacaatgcatat |
36684102 |
T |
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| Q |
120 |
tgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
219 |
Q |
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| T |
36684101 |
tgctagatgagaattttgaacccaaaatatccaattttgggcaggcgaaatttatgaatcccaacattgaagatcatctcagcacgatgtttaaagtgaa |
36684002 |
T |
|
| Q |
220 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| || | |||| ||| ||| |||||| |
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| T |
36684001 |
tgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggaaaaacatataacgaactgactcgttcatccaccaccactaat |
36683902 |
T |
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| Q |
320 |
ctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgtg |
398 |
Q |
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| T |
36683901 |
ctctatgataacccttcaaatttttataatgccattgataaatctctgcctgggcaaggatttgaaaatggagtatgtg |
36683823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 215 - 397
Target Start/End: Complemental strand, 36695862 - 36695680
Alignment:
| Q |
215 |
gtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacacta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36695862 |
gtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacacta |
36695763 |
T |
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| Q |
315 |
ctaatctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgt |
397 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36695762 |
ctaatctatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggacttgaaaatgaagtttgt |
36695680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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