View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_70 (Length: 411)
Name: NF3918_low_70
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 403
Target Start/End: Original strand, 3848948 - 3849071
Alignment:
| Q |
280 |
aaaaccaagacaattatgaaaacacacccaaagtattaccgtaaacaagaaaaccctctttaac--gagtaatttcctacaacatcaaagtcataaaata |
377 |
Q |
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| T |
3848948 |
aaaaccaaga-aattattaaaacacacctaaagtattattgtaaacaagaaaatc-tctttaacaagagtaatttcctacaacatcaaagtcataaaata |
3849045 |
T |
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| Q |
378 |
gtcattataacaatactagaataatt |
403 |
Q |
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| T |
3849046 |
gtcattataacaacactagaataatt |
3849071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 3848686 - 3848801
Alignment:
| Q |
173 |
ttgataccttgaagcaaaaaagagtaaaacaaaattacatcaatcagggatagtatcaattcaatggacaattagaaaaccattaagagttatatataac |
272 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||| | || |
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| T |
3848686 |
ttgataccttaaagcaaaaaagagtaaaacaaaattacatcaaccagaaatagtatc-attcaacggacaattaaaaaaccattaagagttatacaaaag |
3848784 |
T |
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| Q |
273 |
acaaataaaaaccaaga |
289 |
Q |
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| T |
3848785 |
acaaataaaaaccaaga |
3848801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 35524134 - 35524247
Alignment:
| Q |
173 |
ttgataccttgaagcaaaaaagagtaaaacaaaattacatcaatcagggatagtatcaattcaatggacaattagaaaaccattaagagttatatataac |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
35524134 |
ttgataccttgaagcaaaaaagagtaaaacaaaattacatcaacca-------tatcaattcaatggacaattagaaagtcattaggagttatacataac |
35524226 |
T |
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| Q |
273 |
acaaataaaaaccaagacaat |
293 |
Q |
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||||||||||||||||||||| |
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| T |
35524227 |
acaaataaaaaccaagacaat |
35524247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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