View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_73 (Length: 398)
Name: NF3918_low_73
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 40 - 382
Target Start/End: Complemental strand, 1395986 - 1395645
Alignment:
| Q |
40 |
caatcgagacatgttttattatccatgcatgtgaagatccattctcaaaaaagtacccttagctaacaacaccttgttgaagaattcagaagtccaagca |
139 |
Q |
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| T |
1395986 |
caatcgagacatgttttattatccatgcatgtgaagatccattctcaaaaaagtacccttagctaacaacaccttgttgaagaattcagaagtccaagca |
1395887 |
T |
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| Q |
140 |
tgcaaagggacgcctgaaacccggagccataagtacctatttaatttaacaaattgtggatgctaatcttcaaacgcaacgaaaaaataactgaagaatt |
239 |
Q |
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| T |
1395886 |
tgcaaagggacgcctgaaacccggagccataagtacctatttaatttaacaaattgtggatgctaatcttcaaacgcaacgaaaaaataactgaagaatt |
1395787 |
T |
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| Q |
240 |
attttgcttcattattaatacatgaacacatgtttccccccatcggtgcaatttgtaaagacgaaaatctgccgtcaagaagacgttgctccagcgttgg |
339 |
Q |
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| T |
1395786 |
attttgcttcattattaatacatgaacacatgtttc-ccccatcggtgcaattcgtaaagacgaaagtctgccgtcaagaagacgttgctccagcgttgg |
1395688 |
T |
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| Q |
340 |
gataacacaaaaatcatgcacctctgctatcaacccttggcat |
382 |
Q |
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| T |
1395687 |
gataacacaaaaatcatgcacctctgctatcaacccttggcat |
1395645 |
T |
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