View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_75 (Length: 387)
Name: NF3918_low_75
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 5451571 - 5451202
Alignment:
| Q |
1 |
aggcaatacattca--atatatctccattttttcttcaactagtaaagtaactagattaacattgttatttaataccgccaagaaaatacaaagaaagta |
98 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5451571 |
aggcaatatattcattatatatctccattttttcttcaactagtaaagtaactagattaacattgttatttaataccgccaagaaaatacaaagaaagta |
5451472 |
T |
|
| Q |
99 |
acaagattaacatctttacctgagatagaattattggaccaccctgagactcatacaacctttcagctttcattatattcacaatcttggtagtaaatct |
198 |
Q |
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| T |
5451471 |
acaagattaacatctttacctgagatagaattattggaccaccctgagactcatacaacctttcagctttcattatattcacaatcttggtagtaaatct |
5451372 |
T |
|
| Q |
199 |
ttgcatttgaatcttcaccaaacagaaacattaaacaaaagtcaaattaagttattagaagggtaaagtaacaacatcaaattaatatattttttctatt |
298 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5451371 |
ttgcatttgaatcttcaccaaacaaaaacattaaacaaaagtcaaattaagttattgggagggtaaagtaacaacatcaaattaatatattttttctatt |
5451272 |
T |
|
| Q |
299 |
tatagagtgattcttaaagatattattataacagttatattaccttaaatggtccattgtctgttctgaa |
368 |
Q |
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| T |
5451271 |
tatagagtgattcttaaagatattattgtaacagttatattaccttaaatggtccattgtctgttctgaa |
5451202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 32572185 - 32572285
Alignment:
| Q |
115 |
tacctgagatagaattattggaccaccctgagactcatacaacctttcagctttcattatattcacaatcttggtagtaaatctttgcatttgaatcttc |
214 |
Q |
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| T |
32572185 |
tacctgagacataattattggaccaccctgagactcaaatagcctttctgctttcatcatatcaacaatcttctcaataaatttttgcatttgaaacttc |
32572284 |
T |
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| Q |
215 |
a |
215 |
Q |
| |
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| |
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| T |
32572285 |
a |
32572285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 42989545 - 42989633
Alignment:
| Q |
127 |
aattattggaccaccctgagactcatacaacctttcagctttcattatattcacaatcttggtagtaaatctttgcatttgaatcttca |
215 |
Q |
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||||||||||||||||||||||||| | | ||| || |||||||| |||| |||||||| ||||||| |||||||||||| ||||| |
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| T |
42989545 |
aattattggaccaccctgagactcaaatagcctgtctgctttcatcatatcaacaatcttctcagtaaatttttgcatttgaaacttca |
42989633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 1617402 - 1617473
Alignment:
| Q |
115 |
tacctgagatagaattattggaccaccctgagactcatacaacctttcagctttcattatattcacaatctt |
186 |
Q |
| |
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||||||||| | ||||||||||||||||||||||||| | | |||||| |||||||| |||| |||||||| |
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| T |
1617402 |
tacctgagacataattattggaccaccctgagactcaaatagcctttctgctttcatcatatcaacaatctt |
1617473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 52646170 - 52646122
Alignment:
| Q |
115 |
tacctgagatagaattattggaccaccctgagactcatacaacctttca |
163 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||||| ||||| |
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| T |
52646170 |
tacctgagaaagaattattggaccaccctgagactgaaacaacttttca |
52646122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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