View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_76 (Length: 386)
Name: NF3918_low_76
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 375
Target Start/End: Complemental strand, 25064858 - 25064495
Alignment:
| Q |
12 |
gttttaaaagatttattgatatttcataacaaactggtggctttctagccactttcaattttattttttacttaatggaaagttgtatttaactgtctct |
111 |
Q |
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| T |
25064858 |
gttttaagagatttctttatacttcataaccaacttgtgtctttctagccactttcaattttattttttacttaatgaaaagttgtatttaactgtctat |
25064759 |
T |
|
| Q |
112 |
atttctaataccatgccacttagtcttgagcgttttgtggatcataaactatcacaagaacattcccaaccacagtcttcatgttgtatactccttaaaa |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064758 |
atttctaataccatgccacttattcttgagcgttttgtggatcataaactatcacaagaacattcccaaccacagtcttcatgttgtatactccttaaaa |
25064659 |
T |
|
| Q |
212 |
tcacaatactgagttatgtctatctcacgatgcatggacccctcgaattagtctatccttaataaagtgccgtaaagaaaatcttatcaatgactctggt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064658 |
tcacaatactgagttatgtctatctcacgatgcatggacccctcgaattagtctatccttaataaagtgccgtaaagaaaatcttatcaatgactctggt |
25064559 |
T |
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| Q |
312 |
gttattttacgcgagttctcaaatggaagttttctgtctctcttcccatgcagatacaattgat |
375 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064558 |
gttattttacgcgagttcttaaatggaagttttctgtctctcttcccatgcagatacaattgat |
25064495 |
T |
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