View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_77 (Length: 384)
Name: NF3918_low_77
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 33205708 - 33206057
Alignment:
| Q |
18 |
aatttgccaccacgatttcaaccgttgattgacatcaagttttttgagtttttctgactgccacaaaattacaattgatgccgcatcaataagatttgac |
117 |
Q |
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| T |
33205708 |
aatttaccaccacgatttcaaccgttgatcgacatcaagttttttgagtttttgtgactgccacaaaattgcaattgatgccgcatcaataagatttgac |
33205807 |
T |
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| Q |
118 |
tgcgattctctacaatataatgattgtgacaatgatcatgaattaaagtttgaagaaactataatttt-tatgtcaatgttaagtttttatggtattgct |
216 |
Q |
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| T |
33205808 |
cgtgattctttgcaatataagaattgcgacaatgatcatgaattaaaatttcaagaaactatacttttttatgtcaatgttaagtttttatggtattgct |
33205907 |
T |
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| Q |
217 |
tcaatcatagttcgagactgattttgacgttgatcgaaattggaggatgatggtacagataagagggtttacgcaatggtaaaaaattgtgaccaattat |
316 |
Q |
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|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33205908 |
tcaatcatagtttaagactgattttgaggttgatcggaattggaggatgatggtaccgataagagggtttacgcaatggtaaaaaattgtgaccaattat |
33206007 |
T |
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| Q |
317 |
ggtaaagtcacaaaaatactcttgtgttctacgttatttgtatttccact |
366 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
33206008 |
ggtaaagtcaaaaaaatactcttgtgttctaggttatttgtatttccact |
33206057 |
T |
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