View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_8 (Length: 1124)
Name: NF3918_low_8
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 265 - 766
Target Start/End: Original strand, 15871179 - 15871680
Alignment:
| Q |
265 |
ttgaatgcactaatacttgaaatttaactctttctcaattttccctatttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtg |
364 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15871179 |
ttgaatgaactaatacttgaaatttaactttttctgaattttcactctttacaggcttcgtgaacttcatacccttaaaggacatgttgaatctgttgtg |
15871278 |
T |
|
| Q |
365 |
aagctgaaaggacttgacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
464 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15871279 |
aagctgaaaggactggacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
15871378 |
T |
|
| Q |
465 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15871379 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
15871478 |
T |
|
| Q |
565 |
agaagttttagtttcaatcaaatattatatggttctatatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15871479 |
agaagttttagtttcaatcaaatattatatgcttctctatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
15871578 |
T |
|
| Q |
665 |
ttgggaaacttgtgtgaataagcattatgaaaaatttcaacatggtctcaactcattctcatgttatttttgtcttttggaaacactatgacaagcaaat |
764 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15871579 |
ttgggaaacttgtgtgaataagcattatgaaaattttcaacatggtagcaactcattttcatgttatttttgtcttttgggaacactatgacaagcaaat |
15871678 |
T |
|
| Q |
765 |
ac |
766 |
Q |
| |
|
|| |
|
|
| T |
15871679 |
ac |
15871680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 15870874 - 15871131
Alignment:
| Q |
16 |
acatgctcaaaggacccttcatggactttcagcaccacaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15870874 |
acatgctcaaaggacccttcatggactttcagcaccagaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgag |
15870973 |
T |
|
| Q |
116 |
caggctaagcgacgcgctgaagttgctaggtaagcaataacaacatacctagattacgagattttcacgatgattattactttctatcgtctcgtacata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15870974 |
caggctaagcgacgcgctgaagttgctaggtaagcaataacaacatacctagattacgagattttcacgatgattattactttctatcgtctcgtacata |
15871073 |
T |
|
| Q |
216 |
agcaacaaaaatagttaatatcgtttaattttcatgacgtagtataacattgaatgca |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15871074 |
agcaacaaaaatagttaatatcgtttaattttcatgacgtaatataacattgaatgca |
15871131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 778 - 1039
Target Start/End: Original strand, 15871728 - 15871987
Alignment:
| Q |
778 |
cgaccgataaagaattgattcataccttacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatccttattct |
877 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15871728 |
cgaccgataaagaattgattcatacctcacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatgtttattct |
15871827 |
T |
|
| Q |
878 |
gagtttttatgcctgcctagatgaacctccaggaccaaactcgcaaaaacnnnnnnnncttagaaaaagagcgtaagaaagtaatctttaattaagtgcc |
977 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
15871828 |
gagtttttatgcctgtc-cgatgagcctccaggaccaaactcgcaaaaac-tttttttcttaaaaaaagagcataagaaagtaatctttaatcaagtacc |
15871925 |
T |
|
| Q |
978 |
tcttttgagctttgacgtttgtcttaactagcctctgggtctcaacttgcatacaattatac |
1039 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
15871926 |
tcttttgagctttgatgtttgtcttagctagcctctgagtctcaacttgcatacaattatac |
15871987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 45196005 - 45195920
Alignment:
| Q |
326 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
411 |
Q |
| |
|
|||||||| || || |||||||||||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
45196005 |
gagcttcacacactgaaaggacatgttgagtctgttgtaaaactcaagggacttgacattgagacaatccaacaacactacactgt |
45195920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1058 - 1087
Target Start/End: Original strand, 15871999 - 15872028
Alignment:
| Q |
1058 |
ctacaaataagagtacaagaaagaaatata |
1087 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15871999 |
ctacaaataagagtacaagaaagaaatata |
15872028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 53073875 - 53073812
Alignment:
| Q |
312 |
tttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaagg |
375 |
Q |
| |
|
|||||||||||||||||||||| || || || ||||||||||||||||| |||||||||||||| |
|
|
| T |
53073875 |
tttacaggcttcgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaagg |
53073812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 53074102 - 53073970
Alignment:
| Q |
16 |
acatgctcaaaggacccttcatggactttcagcaccacaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgag |
115 |
Q |
| |
|
||||||||| ||||| || ||||||||| || ||||| ||||| |||| || | |||||||| |||| || ||| |||||| |||| |||||||||||| |
|
|
| T |
53074102 |
acatgctcagaggactctacatggactt-ca--accaccagaaagttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgag |
53074006 |
T |
|
| Q |
116 |
caggctaagcgacgcgctgaagttgctaggtaagca |
151 |
Q |
| |
|
|| || ||| || | ||||||||||| ||||||||| |
|
|
| T |
53074005 |
caagcgaagagaagagctgaagttgcaaggtaagca |
53073970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 408
Target Start/End: Complemental strand, 48434949 - 48434867
Alignment:
| Q |
326 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacac |
408 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||| |||||| |||| || |||||||| || || || |||||||| ||||| |
|
|
| T |
48434949 |
gagctccatacactcaagggacatgttgaatctgtggtgaagttgaagggtcttgacattgatacgattcaacaacactacac |
48434867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 315 - 411
Target Start/End: Original strand, 50278288 - 50278384
Alignment:
| Q |
315 |
acaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
411 |
Q |
| |
|
|||||||| | |||||||| || || || || || |||||||| || |||||||| || |||||||| || || ||||||||||||||||| ||||| |
|
|
| T |
50278288 |
acaggcttagggagcttcacacactaaagggtcacgttgaatcagtcgtgaagcttaagggacttgatatcgacactatgcaacaacattatactgt |
50278384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University