View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_80 (Length: 372)
Name: NF3918_low_80
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 45707072 - 45707412
Alignment:
| Q |
20 |
gacagtttaattgcctattttgtccggggcaaagctaattatcaaatcccattgaaagtaattaatgaactaaatgattaaacaactaagtgagcttaaa |
119 |
Q |
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| T |
45707072 |
gacagtttaattgcctattttgtccggggcaaagctaattatcaaatcccattgaaagtaattaatgaactaaatgattaaacaactaagtgagcttaaa |
45707171 |
T |
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| Q |
120 |
ataaaattagaaatgatattaaggtgatgtgtgctttactttttccctcactgtgcaattaaattttattctcgaatacatggatatgtgaattacctga |
219 |
Q |
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| T |
45707172 |
ataaaattagaaatgatattaaggtgatgtgtgctttactttttccctcactatgcaattaaattttattctcgaatacatggatatgtgaattac---- |
45707267 |
T |
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| Q |
220 |
agactgaagtccttgctaagtgaggcaaatcaaatgttttgttgttagttatgatttcgctgtgagtttctaattaatgcatttgtgactatttgttacg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45707268 |
---ctgaagtccttgctaagtgaggcaaatcaaatgttttgttgttagttatgatttcgctgtgagtttctaattaatgcatttgtgactatttgttacg |
45707364 |
T |
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| Q |
320 |
aattgtctccagttatcagtaaaccgttgtgtactttttcatctcact |
367 |
Q |
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| T |
45707365 |
aattgtctccagttatcagtaaaccgttgtgtactttttcatgtcact |
45707412 |
T |
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