View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_82 (Length: 365)
Name: NF3918_low_82
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 30733530 - 30733184
Alignment:
| Q |
5 |
gaggagcacagaaactagaacttatt--tgctagcagctttaatatgctcataggttatattatccaatcctagaattaaggtaatagtggaatctgatt |
102 |
Q |
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| T |
30733530 |
gaggagcacaaaaactagaacttattattgctagcagctttaatatgctcataggttatattatccaaacctagaattaaggtaatagtggaatctgatt |
30733431 |
T |
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| Q |
103 |
tcatatgatgtaaactcctatcaatatatgaattccataaacaaatgtcatagtagaagaatgtaaggaaatatctcctttaacaaactcatatcattat |
202 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30733430 |
tcatatgatgcaaactcatatcaatatatgaattccataaacaaatgtcatagtagaacaatgtaaggaaatatctcctttaacaaactcatatca-tat |
30733332 |
T |
|
| Q |
203 |
caaagttatttgaagattaatctctgattcacattaatcttgtagatattagacagttgttaattattttttattttaatactgcatagtttgcatgtta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30733331 |
caaagttatttgaagattaatctctgattcacattaatcttgtagatattagacagttgttaattattttttattttaatactgcatagtttgcatgtta |
30733232 |
T |
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| Q |
303 |
gagtagagacatatgcacatagaaagcaagtcaattaggattgaattt |
350 |
Q |
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| T |
30733231 |
gagtagagacatatgcacatagaatgcaagtcaattaggattgcattt |
30733184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 350
Target Start/End: Original strand, 14667676 - 14668016
Alignment:
| Q |
5 |
gaggagcacagaaactagaacttatttgctagcagctttaatatgctcataggttatattatccaatcctagaattaaggtaatagtggaatctgatttc |
104 |
Q |
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| T |
14667676 |
gaggagcacaaaaactagaacttatttgctagcagctttaatatgctcataggttatattatccaatcctagaattaaggtaatagtggaatctgatttc |
14667775 |
T |
|
| Q |
105 |
atatgatgtaaactcctatcaatatatgaattccataaacaaatgtcatagtagaagaatgtaaggaaatatctcctttaacaaactcatatcattatca |
204 |
Q |
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| T |
14667776 |
atatgatgcaaactcatatcaatatatgaattccataaa----tgccatagtagaacaatgtaaggaaatatctcctttaacacactcatatcattg-ca |
14667870 |
T |
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| Q |
205 |
aagttatttgaagattaatctctgattcacattaatcttgtagatattagacagttgttaattattttttattttaatactgcatagtttgcatgttaga |
304 |
Q |
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| T |
14667871 |
aagttatttgaagattaatctctgattcacattaatcttgtagatattagacagttgttaattattttttattttaatactgcatagttttcatgttaga |
14667970 |
T |
|
| Q |
305 |
gtagagacatatgcacatagaaagcaagtcaattaggattgaattt |
350 |
Q |
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| T |
14667971 |
gtagagacatatgcacatagaaagcaagtcaattaggattgcattt |
14668016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 14681134 - 14680979
Alignment:
| Q |
129 |
tatgaattccataaacaaatgtcatagtagaagaatgtaaggaaatatctcctttaacaaactcatatcattatcaaagttatttgaagattaatctctg |
228 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||| |||||||| | |||||||||||| |||| |
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| T |
14681134 |
tatgaattccataaacaaatgtcatagtagaacaatgtaaggtagtacctcctttaacaaactcatatcaa-atcaaagtcacttgaagattaatgtctg |
14681036 |
T |
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| Q |
229 |
attcacattaatcttgtagatattagacagttgttaattattttttattttaatact |
285 |
Q |
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| T |
14681035 |
attcacattagtcttgtagatattagacaggtgttaattagtttttatttaaatact |
14680979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 14686400 - 14686308
Alignment:
| Q |
177 |
ctcctttaacaaactcatatcattatcaaagttatttgaagattaatctctgattcacattaatcttgtagatattagacagttgttaattatt |
270 |
Q |
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|||||||| |||||||||||||| |||||||| | |||||||||||||| |||||||||||||| | ||| |||| || || |||||||||||| |
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| T |
14686400 |
ctcctttagcaaactcatatcat-atcaaagtgacttgaagattaatctttgattcacattaatttggtatatataaggcaattgttaattatt |
14686308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 14686252 - 14686206
Alignment:
| Q |
280 |
aatactgcatagtttgcatgttagagtagagacatatgcacatagaa |
326 |
Q |
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|||| ||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
14686252 |
aataatgcatagcttgcatattagagtagagacatatgcacatagaa |
14686206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 14664862 - 14664899
Alignment:
| Q |
280 |
aatactgcatagtttgcatgttagagtagagacatatg |
317 |
Q |
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|||| |||||||||||||| |||||||||||||||||| |
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| T |
14664862 |
aataatgcatagtttgcatattagagtagagacatatg |
14664899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 10945037 - 10945219
Alignment:
| Q |
23 |
aacttatttgctagcagctttaatatgctcataggttat-attatccaatcctagaatt-aaggtaatagtggaatctgatttcatatgatgtaaactcc |
120 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| | ||||| |||||| |
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| T |
10945037 |
aacttgtttgctagcagctttaatatgatcataggttattattatccaatcctagaattgaaggtaatagtagaatctgatttgacttgatgcaaactca |
10945136 |
T |
|
| Q |
121 |
tatcaatatatgaattccataaacaaatgtcata----gtagaagaatgtaaggaaatatctcctttaacaaactcatatcat |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| | | |||||||||||||||| |
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| T |
10945137 |
tatcaatatatgaattccataaacaaatgtcatagtacgtagaacaatgtaaggaagtatctacatcaacaaactcatatcat |
10945219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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