View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_83 (Length: 365)

Name: NF3918_low_83
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_83
NF3918_low_83
[»] chr4 (17 HSPs)
chr4 (88-291)||(5195097-5195300)
chr4 (90-252)||(5181738-5181900)
chr4 (86-291)||(5159467-5159657)
chr4 (147-290)||(4843028-4843172)
chr4 (147-256)||(5172485-5172594)
chr4 (2-89)||(5172709-5172796)
chr4 (2-89)||(5182041-5182128)
chr4 (2-89)||(4842729-4842816)
chr4 (2-89)||(5159793-5159880)
chr4 (152-251)||(5212716-5212815)
chr4 (2-89)||(5195435-5195522)
chr4 (2-88)||(5213602-5213688)
chr4 (322-350)||(5159877-5159905)
chr4 (293-325)||(5159942-5159974)
chr4 (293-325)||(5182190-5182222)
chr4 (322-350)||(5195519-5195547)
chr4 (293-325)||(5195584-5195616)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 5195300 - 5195097
Alignment:
Q  88 aaaaaagttatcttcattgtaacaatccatccccaaaaccatcctgtgaagcagttatgaattaattatttgtgtttggtagtattgataccttcaattg 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5195300 aaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaattg 5195201  T
Q  188 agccgttcatttgattcttgcttaaacttaagattttcaaatttttcaaatgttgaacatctgcaaaaagatagaaaaaagagtaaatagttagagatat 287  Q
    |||||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||||| ||  | | |||| |||||| ||||||||||||||    
T  5195200 agccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttagagatat 5195101  T
Q  288 aatt 291  Q
    ||||    
T  5195100 aatt 5195097  T

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Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 5181900 - 5181738
Alignment:
Q  90 aaaagttatcttcattgtaacaatccatccccaaaaccatcctgtgaagcagttatgaattaattatttgtgtttggtagtattgataccttcaattgag 189  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5181900 aaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaattgag 5181801  T
Q  190 ccgttcatttgattcttgcttaaacttaagattttcaaatttttcaaatgttgaacatctgca 252  Q
    |||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||    
T  5181800 ccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacatctgca 5181738  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 86 - 291
Target Start/End: Complemental strand, 5159657 - 5159467
Alignment:
Q  86 ataaaaaagttatcttcattgtaacaatccatccccaaaaccatcctgtgaagcagttatgaattaattatttgtgtttggtagtattgataccttcaat 185  Q
    |||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5159657 ataaaaaagttatcttcattgtaacaatccatccc------------gtgaagcagttatgaattaattatttgtgtttggtagtattcataccttcaat 5159570  T
Q  186 tgagccgttcatttgattcttgcttaaacttaagattttcaaatttttcaaatgttgaacatctgcaaaaagatagaaaaaagagtaaatagttagagat 285  Q
    |||||||||||||||||| | ||||||| |||| |||||||| |||||||||||||||||||||||| |||   | |||| |||||| ||||||||||||    
T  5159569 tgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaa---aaaaaagagagtacatagttagagat 5159473  T

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Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 4843028 - 4843172
Alignment:
Q  147 aattaattatttgtgtttggtagtattgataccttcaattgagccgttcatttgattcttgcttaaacttaagattttcaaatttttcaaatgttgaaca 246  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |||||||| ||||||||||||||||||    
T  4843028 aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaaca 4843127  T
Q  247 tctgc-aaaaagatagaaaaaagagtaaatagttagagatataat 290  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||||    
T  4843128 tctgcaaaaaagaaagaaaaaagagtacatagttagagatataat 4843172  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 5172594 - 5172485
Alignment:
Q  147 aattaattatttgtgtttggtagtattgataccttcaattgagccgttcatttgattcttgcttaaacttaagattttcaaatttttcaaatgttgaaca 246  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||| |||||||||    
T  5172594 aattaattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaaca 5172495  T
Q  247 tctgcaaaaa 256  Q
    ||||||||||    
T  5172494 tctgcaaaaa 5172485  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 5172796 - 5172709
Alignment:
Q  2 cttaaacactcaggaagtttagcaccaaacatgttacagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataa 89  Q
    ||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5172796 cttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataa 5172709  T

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Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 5182128 - 5182041
Alignment:
Q  2 cttaaacactcaggaagtttagcaccaaacatgttacagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataa 89  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5182128 cttaaacactctggaagtttagcactaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcctgtcataa 5182041  T

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Target: chr4; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 4842729 - 4842816
Alignment:
Q  2 cttaaacactcaggaagtttagcaccaaacatgttacagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataa 89  Q
    ||||||||||||||||||||||| |||||||||||   |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  4842729 cttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttcttccaaatccttcaaattgcatagtcctgtcataa 4842816  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 5159880 - 5159793
Alignment:
Q  2 cttaaacactcaggaagtttagcaccaaacatgttacagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataa 89  Q
    |||||||||||||||| |||||||| |||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5159880 cttaaacactcaggaaatttagcactaaacatgttctggctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataa 5159793  T

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Target: chr4; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 5212815 - 5212716
Alignment:
Q  152 attatttgtgtttggtagtattgataccttcaattgagccgttcatttgattcttgcttaaacttaagattttcaaatttttcaaatgttgaacatctgc 251  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||| ||||||||  |||||||| ||| |||||||||||||||||||    
T  5212815 attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacatctgc 5212716  T

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Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 5195522 - 5195435
Alignment:
Q  2 cttaaacactcaggaagtttagcaccaaacatgttacagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataa 89  Q
    |||||||| || ||||||||||||| |||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5195522 cttaaacaatctggaagtttagcactaaacatgtttttgctgatatccagttctaccaaatccttaaaattgcatagtcctgtcataa 5195435  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 5213688 - 5213602
Alignment:
Q  2 cttaaacactcaggaagtttagcaccaaacatgttacagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcata 88  Q
    ||||||||||| |||||||  || | |||||||||| |||||||||| || |||||||||||||| || ||||||||||||||||||    
T  5213688 cttaaacactcgggaagttgcgcgctaaacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgtcata 5213602  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 5159905 - 5159877
Alignment:
Q  322 aagaactctgaggtttgttaagttgctta 350  Q
    |||||||||||||||||||||||||||||    
T  5159905 aagaactctgaggtttgttaagttgctta 5159877  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 5159974 - 5159942
Alignment:
Q  293 gtatgccagtgatgtgagattgctaaggaaaga 325  Q
    |||||||||||||||||||||||||| ||||||    
T  5159974 gtatgccagtgatgtgagattgctaatgaaaga 5159942  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 5182222 - 5182190
Alignment:
Q  293 gtatgccagtgatgtgagattgctaaggaaaga 325  Q
    |||||||||||||||||||||||||| ||||||    
T  5182222 gtatgccagtgatgtgagattgctaatgaaaga 5182190  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 5195547 - 5195519
Alignment:
Q  322 aagaactctgaggtttgttaagttgctta 350  Q
    |||||||||||||||||||||||||||||    
T  5195547 aagaactctgaggtttgttaagttgctta 5195519  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 5195616 - 5195584
Alignment:
Q  293 gtatgccagtgatgtgagattgctaaggaaaga 325  Q
    |||||||||||||||||||||||||| ||||||    
T  5195616 gtatgccagtgatgtgagattgctaatgaaaga 5195584  T

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