View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_85 (Length: 359)

Name: NF3918_low_85
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_85
NF3918_low_85
[»] chr3 (3 HSPs)
chr3 (1-339)||(45382702-45383050)
chr3 (256-302)||(47362558-47362604)
chr3 (1-87)||(50084778-50084866)
[»] chr6 (12 HSPs)
chr6 (251-331)||(27661703-27661783)
chr6 (251-288)||(26650237-26650274)
chr6 (251-288)||(26756205-26756242)
chr6 (247-287)||(12627824-12627864)
chr6 (251-291)||(29449688-29449728)
chr6 (176-226)||(8148268-8148318)
chr6 (179-232)||(20809178-20809231)
chr6 (251-280)||(28783014-28783043)
chr6 (233-290)||(34057962-34058019)
chr6 (177-213)||(29670971-29671007)
chr6 (254-290)||(30537508-30537544)
chr6 (179-227)||(31811989-31812037)
[»] chr5 (6 HSPs)
chr5 (26-80)||(27803033-27803089)
chr5 (251-290)||(28136673-28136712)
chr5 (251-288)||(645342-645379)
chr5 (242-287)||(11601688-11601733)
chr5 (1-87)||(41978281-41978369)
chr5 (179-227)||(12478334-12478382)
[»] chr7 (4 HSPs)
chr7 (251-291)||(43160491-43160531)
chr7 (242-289)||(10893872-10893919)
chr7 (251-293)||(650524-650566)
chr7 (251-287)||(18750887-18750923)
[»] chr1 (4 HSPs)
chr1 (1-81)||(31686728-31686810)
chr1 (242-287)||(264615-264660)
chr1 (191-231)||(27835482-27835522)
chr1 (251-287)||(43609830-43609866)
[»] chr8 (6 HSPs)
chr8 (184-226)||(14229600-14229642)
chr8 (251-291)||(32691750-32691790)
chr8 (24-77)||(40688136-40688191)
chr8 (242-290)||(41686804-41686852)
chr8 (24-87)||(31344424-31344487)
chr8 (242-290)||(31681833-31681881)
[»] chr2 (2 HSPs)
chr2 (197-293)||(9956949-9957045)
chr2 (1-87)||(9151331-9151417)
[»] chr4 (4 HSPs)
chr4 (251-301)||(10164460-10164510)
chr4 (251-289)||(28890768-28890806)
chr4 (247-283)||(29388374-29388410)
chr4 (251-291)||(45615427-45615467)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 45383050 - 45382702
Alignment:
Q  1 ttttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaa-tttagnnnnnnnnnnnn 99  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||                
T  45383050 ttttcattgtttccgaaagtacaacacaattattcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaaatttagaaaaataaaaaa 45382951  T
Q  100 taagccgtaattctgtatgacaattaagtttcatagaagtggagaaagcaaaggaagtgactaattggtaaataatgaactttgtagcacagacatttct 199  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||    
T  45382950 taagccgtaattctgtatgacaat-aagtttcatagaagtggagaaagcaaaggaattgactaattggtaaataatgaactttgtagcaca-atacttct 45382853  T
Q  200 gatcgaaggcatgtccggtgtccgacatttgtctgtgtc-----------tgtcaccaacatatgtgattacattcaaatatgttattttcttaaattac 288  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45382852 gatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttcttaaattac 45382753  T
Q  289 tactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctct 339  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  45382752 tactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctct 45382702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  256 attacattcaaatatgttattttcttaaattactactgatgttgacg 302  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 50084866 - 50084778
Alignment:
Q  1 ttttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaaaatttag 87  Q
    ||||||||||||| | || | |||  ||||||||||| ||||||||||  |||||| |||||||||||||||| ||| ||||| |||||    
T  50084866 ttttcattgtttctggaaattcaaggcaattgttcacatcaagagtctcctttctccttgttaacaagtaaaattaatacaaattttag 50084778  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 331  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattac 288  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattac 288  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  247 acatatgtgattacattcaaatatgttattttcttaaatta 287  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattactac 291  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  176 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 226  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  179 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 232  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  251 atgtgattacattcaaatatgttattttct 280  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  233 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 290  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  177 aactttgtagcacagacatttctgatcgaaggcatgt 213  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  254 tgattacattcaaatatgttattttcttaaattacta 290  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  179 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 227  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 27803033 - 27803089
Alignment:
Q  26 acaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 80  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  27803033 acaattgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 27803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattacta 290  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattac 288  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  242 caccaacatatgtgattacattcaaatatgttattttcttaaatta 287  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41978281 - 41978369
Alignment:
Q  1 ttttcattgtttccgaaagtacaacacaattgttcacttcaagag--tcttttctcattgttaacaagtaaaagtaacacaaaatttag 87  Q
    ||||||||||||||| || | ||| |||||| |||||||||||||  |||| |||  ||| ||||||||||||  |||||||| |||||    
T  41978281 ttttcattgtttccggaaatgcaaaacaattcttcacttcaagagcctcttatcttcttgctaacaagtaaaaacaacacaaattttag 41978369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  179 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 227  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattactac 291  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  242 caccaacatatgtgattacattcaaatatgttattttcttaaattact 289  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattactactg 293  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaatta 287  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 31686810 - 31686728
Alignment:
Q  1 ttttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaaa 81  Q
    ||||||||||||  | || | ||| ||||| |||||||||||||||||  |||||| |||||||||||||||| |||||||||    
T  31686810 ttttcattgttttaggaaatgcaagacaatcgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaaa 31686728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  242 caccaacatatgtgattacattcaaatatgttattttcttaaatta 287  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  191 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 231  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaatta 287  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  184 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 226  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattactac 291  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 40688191 - 40688136
Alignment:
Q  24 acacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaaca 77  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  40688191 acacaattgttcacttcaagagtctagtatctcattgttaccaagtaaaattaaca 40688136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  242 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 290  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 31344424 - 31344487
Alignment:
Q  24 acacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 87  Q
    |||||| ||||||||||||||||||| |||| |||| |  |||||||| ||||||||| |||||    
T  31344424 acacaagtgttcacttcaagagtcttatctctttgtcaggaagtaaaattaacacaaactttag 31344487  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  242 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 290  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  197 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 293  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9151331 - 9151417
Alignment:
Q  1 ttttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 87  Q
    ||||||| ||||||  || | ||| ||||||||||||||||||||||||||||| || ||| || |||  | ||||||||| |||||    
T  9151331 ttttcatcgtttccagaaatgcaagacaattgttcacttcaagagtcttttctctttattaccatgtaggaataacacaaattttag 9151417  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 301  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattact 289  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  247 acatatgtgattacattcaaatatgttattttcttaa 283  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  251 atgtgattacattcaaatatgttattttcttaaattactac 291  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

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