View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_87 (Length: 354)
Name: NF3918_low_87
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 45861024 - 45861352
Alignment:
| Q |
9 |
agcacagaactgcataatagacattttttctatcaaaacgagttatattaccaaaagctatacaaatatagagaagagtttgaaattacctcatctccaa |
108 |
Q |
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| T |
45861024 |
agcacggaactgcataatagacattttttctatcaaaacgagttctattaccaaaagctatacaaatatagagaagagtttgaaattacctcatctccaa |
45861123 |
T |
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| Q |
109 |
aagggcggtcaatatttgaagatatctttgatgaaaaagcagccaggagtaatctcaatgctaaagcagtttgaccacctgatatttagatcataagaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45861124 |
aagggcggtcaatatttgaagatatctttgatgaaaaagcagccaggagtaatctcaatgctaaagcagtttgaccacctgatatttagatcataagaca |
45861223 |
T |
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| Q |
209 |
ataaacatgtttctcttacagatattaaatagacatctcaaaaccaactcatggtacaaaataaatctgtttcacccttatcttgatttagattaagtgg |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45861224 |
ataaacatgtttctcctacagatattaaatagacatctcaaaaccaactcatggtacaaaataaatctgtttcacccttatcttgatttagattaagtgg |
45861323 |
T |
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| Q |
309 |
agtttaatgtgtctttaaggtacaaggat |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45861324 |
agtttaatgtgtctttaaggtacaaggat |
45861352 |
T |
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