View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_9 (Length: 898)
Name: NF3918_low_9
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_9 |
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| [»] scaffold0571 (3 HSPs) |
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| [»] scaffold1118 (2 HSPs) |
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| [»] scaffold0989 (1 HSPs) |
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| [»] scaffold2028 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 694; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 12 - 756
Target Start/End: Original strand, 14389567 - 14390311
Alignment:
| Q |
12 |
atgaagatactttttcctatagagactaaaacaggacattagcataaattggaagacaaaaaatatattaacgtattcataaataagtgacactaaccaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14389567 |
atgaagatactttttcctatagagactaaaacaggatattagcataaattggaagaaaaaaaatatattaacgtattcataaataagtgacactaaccaa |
14389666 |
T |
|
| Q |
112 |
gcattttaattcagcaggaacaatagtcccctcttcaatgtattgaaggatctcatgaggagttccaatcatcaagccaattgaggaatttgacttttcg |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14389667 |
gcattttaattcagcaggaacaatagtcccctcttcaatgtattgaaggatctcataaggagttccaatcatcaagccaattgaggaatttgatttttcg |
14389766 |
T |
|
| Q |
212 |
gtatctgatgaagcacgattctttgcggacttcacttctgcattatggatgatatatcttgcagcattaaaacactgcaatgcaaaccaagttgtaaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14389767 |
gtatctgatgaagcacgattctttgcggacttcacttctgcattatggatgatatatcttgcagcattaaaacactgcaatgcaaaacaagttgtaaaaa |
14389866 |
T |
|
| Q |
312 |
tcaaaaccaaatcaagaattgaagatgcatactccatagaactaatcagacaagatcatgatagtatgtagttgggatagagtgacctgttcaactttct |
411 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14389867 |
tcaaaaccaaatcaagaattgaagatgcatactctatagaactaatcagacaagatcatgatagtatgtagttgggatagagtgacctgttcaactttct |
14389966 |
T |
|
| Q |
412 |
cctctgaagcacaaagaacaacggctcgaggatactttgaatttgaaccaagcaactctctatctcgtcgcagcatctttagacaaggaaataatgaaag |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14389967 |
cctctgaagcacaaagaacaacggctcgaggatactttgaattagaaccaagcaactctctatctcgtcgcagcatctttagacaaggaaataatgaaag |
14390066 |
T |
|
| Q |
512 |
tagaaggaacaaaacaataggattaactatcataaataatggacagtgtttcaaaaaggatgaaacaagttggcataatgaatttggaatatgatactga |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14390067 |
tagaaggaacaaaacaataggattaactatcataaataatggacagtgtttc-aaaaggatgaaacaagttggcataatgaatttggaatatgatactga |
14390165 |
T |
|
| Q |
612 |
gaaatcttctgtgtgattttacagttcaagacaataatgaggaaccaatatagaacagtttaccttaacatcaacctgaaataaatgaaatcaaaacca- |
710 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14390166 |
gaaatcttctgtgtgattttacagtgcaagacaataatgaggaaccaatatagaacagtttaccttaacatcaacctgaaataaatgaaatcaaaaccat |
14390265 |
T |
|
| Q |
711 |
ttttttatcaaaatgtaaaccaagatagtggttgtgataacagttg |
756 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14390266 |
ttttttttcaaaatgtaaaccaagatagtggttgtgataacagttg |
14390311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 754 - 883
Target Start/End: Original strand, 14390369 - 14390498
Alignment:
| Q |
754 |
ttggacatatcaaacacctctatgtcacagtccaaatcgtggtcacggaccattatttaaaacattggcgaaaaccttaatttaggatctgttttccatg |
853 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14390369 |
ttggacatatcaaacacctctatgtcacagtccaaatcgtggtcacggaccattatttaaaacattggcaaaaaccttaatttaggatctgttttccatg |
14390468 |
T |
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| Q |
854 |
ttttctggtttcattttcacttcaactaaa |
883 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14390469 |
ttttctggtttcattttcacttcaactaaa |
14390498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 118; Significance: 1e-59; HSPs: 3)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 215 - 475
Target Start/End: Original strand, 6346 - 6608
Alignment:
| Q |
215 |
tctgatgaagcacgattctttgcggacttcacttctgcattatggatgatatatcttgcagcattaaaacactgcaatgcaaaccaag---ttgtaaaaa |
311 |
Q |
| |
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|||||||||| | ||||||||| ||||||| ||||||||| | |||||||||||||||||||||||| |||| |||||| ||| || | ||||||| |
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| T |
6346 |
tctgatgaagtagaattctttgcagacttcaattctgcattttcgatgatatatcttgcagcattaaagcactacaatgccaacaaaaaaatagtaaaaa |
6445 |
T |
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| Q |
312 |
tcaaaaccaaatcaagaattgaagatgcatactccatagaactaatcagacaagatcatgatagtatgtagttgggatagagtgacctgttcaactttct |
411 |
Q |
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|||||| || | || | || | |||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||| |
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| T |
6446 |
tcaaaatcacttaaaaacttctaaatgcatactctagagaactaatcagacaagatcatgatagtatttaga-gggatagagttacctgttcaactctct |
6544 |
T |
|
| Q |
412 |
cctctgaagcacaaagaacaacggctcgaggatactttgaatttgaaccaagcaactctctatc |
475 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
6545 |
cctctaaagcacaaagaacaacggctcgaggatgctttgaattcgaaccaagcaactctctatc |
6608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 802 - 883
Target Start/End: Original strand, 7120 - 7201
Alignment:
| Q |
802 |
accattatttaaaacattggcgaaaaccttaatttaggatctgttttccatgttttctggtttcattttcacttcaactaaa |
883 |
Q |
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||||| |||||||||| |||| ||||||| ||| |||||||||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
7120 |
accataatttaaaacaccggcgtaaacctttattcaggatctgttttccatgttttctgttttcactttctcttcaactaaa |
7201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 6645 - 6686
Alignment:
| Q |
485 |
catctttagacaaggaaataatgaaagtagaaggaacaaaac |
526 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6645 |
catctttagacaaggaaataatgaacgtagaaggaacaaaac |
6686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 470
Target Start/End: Original strand, 1371 - 1445
Alignment:
| Q |
396 |
acctgttcaactttctcctctgaagcacaaagaacaacggctcgaggatactttgaatttgaaccaagcaactct |
470 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||||||| ||||| ||| ||||||||| ||||| |
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| T |
1371 |
acctgttcaacttttacttctgaagcacaaagcacaacggctcgaggaggctttgtattcgaaccaagcgactct |
1445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 1485 - 1526
Alignment:
| Q |
485 |
catctttagacaaggaaataatgaaagtagaaggaacaaaac |
526 |
Q |
| |
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||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
1485 |
catctttaggcaaggaaatgatgaacgtagaaggaacaaaac |
1526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 2382 - 2455
Alignment:
| Q |
129 |
gaacaatagtcccctcttcaatgtattgaaggatctcatgaggagttccaatcatcaagccaattgaggaattt |
202 |
Q |
| |
|
|||||| | |||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||| | |||||| |
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|
| T |
2382 |
gaacaacaatcccatcttcaatgtattgaagaatctcacaaggagttccaatcattaagccaattcaagaattt |
2455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2028 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold2028
Description:
Target: scaffold2028; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 61 - 1
Alignment:
| Q |
215 |
tctgatgaagcacgattctttgcggacttcacttctgcattatggatgatatatcttgcag |
275 |
Q |
| |
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|||||||||| | ||||||||| ||||||| ||||||||| | ||||||||||||||||| |
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|
| T |
61 |
tctgatgaagtagaattctttgcagacttcaattctgcattttcgatgatatatcttgcag |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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