View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_91 (Length: 350)
Name: NF3918_low_91
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_91 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 5148066 - 5148397
Alignment:
| Q |
1 |
aattgatttgtgagggccatgtagcggggacctagggtgacatatatagctccaattcaattcaatttcaattgttatattgtcttatttgtcacatggg |
100 |
Q |
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| T |
5148066 |
aattgatttgtgagggccatgtagcggggacctagggtgacatatatagctccaattcaattcaatttcaattgttatattgtcttatttgtcacatggg |
5148165 |
T |
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| Q |
101 |
caatgataaatacatctagacaaaaatacgaagtcagtgtggcctatatatacacatcaaagggtctcatttgaaaattcaccttcttctggaaaattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148166 |
caatgataaatacatctagacaaaaatacgaagtcagtgtggcctatatatacacatcaaagggtctcatttgaaaattcaccttcttctggaaaattat |
5148265 |
T |
|
| Q |
201 |
atcttgcatgtctaaatcaacaaaagaagactcttacagcctaatatgaaagcgaaagcatgtacttcctaggcccacattcaacttgatctttatctat |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148266 |
atcttgcatgtccaaatcaacaaaagaagactcttacagcctaatatgaaagcgaacgcatgtacttcctaggcccacattcaacttgatctttatctat |
5148365 |
T |
|
| Q |
301 |
actagactagatagatctcatacatcgactat |
332 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
5148366 |
actagactagatagatctcatgcatcgactat |
5148397 |
T |
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