View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_92 (Length: 349)
Name: NF3918_low_92
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 105 - 337
Target Start/End: Original strand, 34953666 - 34953898
Alignment:
| Q |
105 |
acactcatcggatgcattaactcctataccgccaccttctccactaaacggttcatctacaccaccttctccagtactagatggttcatctccaccacct |
204 |
Q |
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| T |
34953666 |
acactcatcggatgcattaactcctataccgccaccttctccactaaacggttcatctacaccaccttctccagtactagatggttcatctccaccacct |
34953765 |
T |
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| Q |
205 |
tctccacttgatggttcaactcttactccaccacctgttcagcaagtcggttcatctccaccaccactagggactgatgtgacaaatccaattactccaa |
304 |
Q |
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| T |
34953766 |
tctccgcttgatggttcaactcttactccaccacctgttcagcaagtcggttcatctccaccaccactagggactgatgtgacaaatccaattactccaa |
34953865 |
T |
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| Q |
305 |
ctcaatctcctgtttcagaacctcctcctccta |
337 |
Q |
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| T |
34953866 |
ctcaatctcctgtttcagaacctcctcctccta |
34953898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34953562 - 34953610
Alignment:
| Q |
1 |
ttggtgattgttcttgctgatagaaccaacaaaaactcaaaccaaacaa |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34953562 |
ttggtgattgttcttgctgatagaaccaacaaaaactcaaaccaaacaa |
34953610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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