View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_94 (Length: 347)
Name: NF3918_low_94
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 11896279 - 11896609
Alignment:
| Q |
1 |
actgatccaggagtcgtggatcagtacttgaaattgtacacgattgaccacgactggccacctattgaaattgtacaccttataacttgctataaacact |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
11896279 |
actgatccacgagtcgtggatcagtacttgaaattgtacacgactgaccacgactggccgcctattaaaattgtacaccttataacttgctataaacact |
11896378 |
T |
|
| Q |
101 |
tgagtagttgagtttcaacaagaaaaacaactagaactacaacggcaaaaaggattgaaaaattcaacaatccatgctggacttaccaaaagaccaataa |
200 |
Q |
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| T |
11896379 |
tgagtagttgagtttcaacaagtaaaacaactagaactacaaggacaaaaaggattgaaaaattcaacaatccatgctggacttaccaaaagaccaataa |
11896478 |
T |
|
| Q |
201 |
ggcataggagcaggcctaccaataaactgagtatactgatccaaaaccaattcaggagatgaaccagcnnnnnnntacaaatcaaaaacaccgccaatca |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
11896479 |
ggcataggagcaggcctaccaatgaactgagtatactgatccaaaaccaattcaggagatgaaccagcaaaaaaatacaaatcaaaaacaccaccaatca |
11896578 |
T |
|
| Q |
301 |
ccttataagtaagacgatcaccgctataaac |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11896579 |
ccttataagtaagacgatcaccgctataaac |
11896609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 11901945 - 11902275
Alignment:
| Q |
1 |
actgatccaggagtcgtggatcagtacttgaaattgtacacgattgaccacgactggccacctattgaaattgtacaccttataacttgctataaacact |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
11901945 |
actgatccacgagtcgtggatcagtacttgaaattgtacacgactgaccacgactggccgcctattaaaattgtacaccttataacttgctataaacact |
11902044 |
T |
|
| Q |
101 |
tgagtagttgagtttcaacaagaaaaacaactagaactacaacggcaaaaaggattgaaaaattcaacaatccatgctggacttaccaaaagaccaataa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902045 |
tgagtagttgagtttcaacaagtaaaacaactagaactacaaggacaaaaaggattgaaaaattcaacaatccatgctggacttaccaaaagaccaataa |
11902144 |
T |
|
| Q |
201 |
ggcataggagcaggcctaccaataaactgagtatactgatccaaaaccaattcaggagatgaaccagcnnnnnnntacaaatcaaaaacaccgccaatca |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
11902145 |
ggcataggagcaggcctaccaatgaactgagtatactgatccaaaaccaattcaggagatgaaccagcaaaaaaatacaaatcaaaaacaccaccaatca |
11902244 |
T |
|
| Q |
301 |
ccttataagtaagacgatcaccgctataaac |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11902245 |
ccttataagtaagacgatcaccgctataaac |
11902275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 61 - 331
Target Start/End: Original strand, 11889667 - 11889931
Alignment:
| Q |
61 |
cctattgaaattgtacaccttataacttgctataaacacttgagtagttgagtttcaacaagaaaaaca--actagaactacaacggcaaaaaggattga |
158 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| | |||||||| ||| |
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| T |
11889667 |
cctattaaaattgtacaccttataacttgctataaacacttgagt--------ttcaacaagtaaaacacaactcaaactacaatgataaaaaggaatga |
11889758 |
T |
|
| Q |
159 |
aaaattcaacaatccatgctggacttaccaaaagaccaataaggcataggagcaggcctaccaataaactgagtatactgatccaaaaccaattcaggag |
258 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11889759 |
aaaattcaacaatccgtgctggacttaccaaaagaccaataaggcataggagcaggcctaccaatgaactgagtatactgatccaaaaccaattcaggag |
11889858 |
T |
|
| Q |
259 |
atgaaccagcnnnnnnntacaaatcaaaaacaccgccaatcaccttataagtaagacgatcaccgctataaac |
331 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11889859 |
atgaaccagaaaaaaaatacaaatcaaaaacaccaccaatcaccttataagtaagacgatcaccgctataaac |
11889931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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