View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_98 (Length: 335)
Name: NF3918_low_98
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 39170459 - 39170153
Alignment:
| Q |
17 |
aacatcaaggagacaaaaacccataatcatggtggtcgaagtgcctattatttctttccccaaacaaaatcactgctatttgatgaaaaacgaattgagt |
116 |
Q |
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| T |
39170459 |
aacatcaaggagacaaaaacccataatcatggtggtcgaagtgcctattatttctttccccaaaca------ctgccatttgatgaaaaacgaattgagt |
39170366 |
T |
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| Q |
117 |
aatagaaagtgggagagtaaaaaacttgatgactagtttaagatgtgattgtcttagctaagtattgtattttctattttttaagatgagtcatataatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39170365 |
aatagaaagtgggagagtaaaaaacttgatgactagtttaagatgtgattgtcttagctaagtatcgtattttctattttttaagatgagtcatataatt |
39170266 |
T |
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| Q |
217 |
ttggaataaggaaatttaagtgagttggactctaaaaaggtcaccagaattatgaaaggtttggtaagcactacctattagaatgaacaatcacatatgc |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170265 |
ttggaataaggaaatttaagtgagttgaactctaaaaaggtcaccaaaattatgaaaggtttggtaagcactacctattagaatgaacaatcacatatgc |
39170166 |
T |
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| Q |
317 |
ttgtctctgctcc |
329 |
Q |
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|||| |||||||| |
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| T |
39170165 |
ttgtttctgctcc |
39170153 |
T |
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