View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_99 (Length: 333)
Name: NF3918_low_99
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 51487185 - 51486883
Alignment:
| Q |
14 |
caaagggagaggaagtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaa |
113 |
Q |
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| T |
51487185 |
caaagggagaggaagtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaagcatagcatatatagtcattttcttcacctgttaccaa |
51487086 |
T |
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| Q |
114 |
agaaacagcaacaatcaggaaaagaatacataaatcccaaaataagcaactgttgacacggattagtttacatattactttgctattctcacgatttgtt |
213 |
Q |
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| T |
51487085 |
agaaacagcaacaatcaggaaaagaatacataaatcccaa--taagcaactgttgacacggattagtttacatattactttgctattctcacgatttgtt |
51486988 |
T |
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| Q |
214 |
tctctattctattaggattaagagttttgtatccttataaataccagtcgctgctcgctgatttagtgcttaattttttgtatcatcaatcataattata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51486987 |
tctctattctattaggattaagagttttgtatccttataaataccagtcgctgctcgctgatttagtgcttaattttttgtatcatgaatcataattata |
51486888 |
T |
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| Q |
314 |
caatg |
318 |
Q |
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||||| |
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| T |
51486887 |
caatg |
51486883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 30199324 - 30199411
Alignment:
| Q |
26 |
aagtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaa |
114 |
Q |
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| T |
30199324 |
aagtttgcaattactaacctt-gctttctccaacttcttgaccaaatcaaccatagcatatataatcattttcttcaccttttaccaaa |
30199411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 51507705 - 51507607
Alignment:
| Q |
25 |
gaagtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
124 |
Q |
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| T |
51507705 |
gaagtttgcaaccactaacctt-gctttctccaacttctccaccagttcaagcatagcatatataatcattttcttcacctttgaccaaagaagcagcaa |
51507607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 51464117 - 51464030
Alignment:
| Q |
25 |
gaagtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaa |
113 |
Q |
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| T |
51464117 |
gaagtttgcaatcactaacctt-gctttctctaatttttcaaccacatcaagcatagcatgtacggcaattttcttcacctggtaccaa |
51464030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 30648743 - 30648817
Alignment:
| Q |
50 |
tttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
124 |
Q |
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| T |
30648743 |
tttctccaatgttttaaccacataaaccatagtgtaaataatcattttcttcacctgtcaccaaagaagcagcaa |
30648817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 20865031 - 20865074
Alignment:
| Q |
66 |
accacatcaaacatagcatatatagtcattttcttcacctgtta |
109 |
Q |
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| T |
20865031 |
accacatcaagcatagcatgtataatcattttcttcacctgtta |
20865074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 27401909 - 27401835
Alignment:
| Q |
50 |
tttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
124 |
Q |
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||||||||| || || |||||||| | ||||| ||||| |||||||||||||||||||| |||||| |||||| |
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| T |
27401909 |
tttctccaactttttgaccacatcgatcatagtatatacgatcattttcttcacctgttacaaaagaagcagcaa |
27401835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 5179468 - 5179410
Alignment:
| Q |
66 |
accacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
124 |
Q |
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|||||||||| ||||| |||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
5179468 |
accacatcaaccatagtgtatataatcattttcttcacctgtcaccaaagaagcagcaa |
5179410 |
T |
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