View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_11 (Length: 299)
Name: NF3919_high_11
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 294
Target Start/End: Original strand, 30699182 - 30699465
Alignment:
| Q |
3 |
aagttaaatattttggaagaagatttacctttaatggtaatactgttgaggaaaatctcaagatccattttattttagaaatttagaaattgacttgttc |
102 |
Q |
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| T |
30699182 |
aagttaaatattttggaagaagatttacccttaatggtaatactgttgaggaaaatctcaagacccatttcattttagaaatttagaaattgacttgttc |
30699281 |
T |
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| Q |
103 |
tatatatagaacttataatttattcttannnnnnnncttaacaaatgctctttctctcnnnnnnnncaaatgtccttccttatacacgatcctttaataa |
202 |
Q |
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| T |
30699282 |
tatatatagaacttataatttattatt---ttttttcttaacaaatgctctttctctc-aaaaaaacaaatg----tccttatacacgatcctttaataa |
30699373 |
T |
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| Q |
203 |
tatagtacattttgttgtcggaaaattattaataatctgctcaaaatttgttttgaaattgttatttaattttttcagacggtgcctatgat |
294 |
Q |
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| T |
30699374 |
tatagggcattttgttgtcggaaaattattaataatctgctcaaaatttgttttgaaattgttatttaattttttcagacggtgtctatgat |
30699465 |
T |
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