View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_12 (Length: 289)
Name: NF3919_high_12
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_12 |
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| [»] scaffold0249 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 21248896 - 21249157
Alignment:
| Q |
18 |
atatgttggtccgagtctgccctgcattgatcaacaactaaatgagattatttgcaaactataaataaataaataatcaatttttgtgtaactaaaaatg |
117 |
Q |
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||||||||||| |||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21248896 |
atatgttggtcggagtctaccctgcattggtcaacaattaaatgaaattatttgcaaactataaataaataaataatcaatttttgtgtaactaaaaatg |
21248995 |
T |
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| Q |
118 |
acattcctatgcagataatcaaccatggagtcaacacttcgttgattgaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21248996 |
acattcctatgcagataatcaaccatggagtcaacacttcgttgattgaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaa |
21249095 |
T |
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| Q |
218 |
gaagaaattttggcaaactccaaatgatatggaaggatttggtcagatgtttgttgtctctg |
279 |
Q |
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| T |
21249096 |
gaagaaattttggcaaactccaaatgatatggaaggatttggtcagatgtttgttgtctctg |
21249157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 279
Target Start/End: Complemental strand, 22984142 - 22984001
Alignment:
| Q |
138 |
aaccatggagtcaacacttcgttgattgaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaagaagaaattttggcaaactc |
237 |
Q |
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||||||||||||||||||| ||| ||||||| | |||| |||| || || ||||||| | ||| ||| | || ||||||||||||| ||||||||| | |
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| T |
22984142 |
aaccatggagtcaacactttattggttgaaaacatgaagaaaggtgttgaacaattcttcaaccttccaatcgatgagaagaagaaatattggcaaacac |
22984043 |
T |
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| Q |
238 |
caaatgatatggaaggatttggtcagatgtttgttgtctctg |
279 |
Q |
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| T |
22984042 |
caaatgatatgcaaggatttggtcagttgtttgttgtatctg |
22984001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 22932589 - 22932733
Alignment:
| Q |
138 |
aaccatggagtcaacacttcgttgattgaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaa---gaagaaattttggcaaa |
234 |
Q |
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| T |
22932589 |
aaccatggagtcaacacttcactggttgaaaatatgaagattggtgttgaacaattcttcaaccttccaatggaagagaagaagaagaaattttggcaaa |
22932688 |
T |
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| Q |
235 |
ctccaaatgatatggaaggatttggtcagatgtttgttgtctctg |
279 |
Q |
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| T |
22932689 |
caccaaatgatatacaaggatttggtcagttgtttgttgtatctg |
22932733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 21350452 - 21350523
Alignment:
| Q |
208 |
tggaagagaagaagaaattttggcaaactccaaatgatatggaaggatttggtcagatgtttgttgtctctg |
279 |
Q |
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| T |
21350452 |
tggaagagaagaagaaattttggcaaacaccaaatgatgtgcaggggtttggtcagttgtttgttgtatctg |
21350523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 22927940 - 22928049
Alignment:
| Q |
165 |
gaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaagaagaaattttggcaaactccaaatgatatggaaggatttggtcaga |
264 |
Q |
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||||| || |||||||| || |||| |||||||| || || |||||||||||||||||||| ||||||||||| | |||||| | || |||||||| |
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| T |
22927940 |
gaaaatgtgaagataggggttcaagagttcttaagtcttccggtggaagagaagaagaaattacggcaaactccagaagatatgcaggggtttggtcaat |
22928039 |
T |
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| Q |
265 |
tgtttgttgt |
274 |
Q |
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|||||||||| |
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| T |
22928040 |
tgtttgttgt |
22928049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 23022971 - 23022864
Alignment:
| Q |
165 |
gaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaagaagaaattttggcaaactccaaatgatatggaaggatttggtcaga |
264 |
Q |
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||||| || ||||||||| || |||| ||| |||| || ||| ||||||||||||||||||||||||||| | ||| ||||| || || |||||||| |
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| T |
23022971 |
gaaaatgtgaagataggtgttcaagagttcctaagtcttccattggaagagaagaagaaattttggcaaaaccaaaacgatattgaggggtttggtcaac |
23022872 |
T |
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| Q |
265 |
tgtttgtt |
272 |
Q |
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|||||||| |
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| T |
23022871 |
tgtttgtt |
23022864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 21263227 - 21263290
Alignment:
| Q |
216 |
aagaagaaattttggcaaactccaaatgatatggaaggatttggtcagatgtttgttgtctctg |
279 |
Q |
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|||||||||||||||||||| ||| ||||||| || |||||||| || |||||||||| |||| |
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| T |
21263227 |
aagaagaaattttggcaaacaccagatgatattgagggatttggccaactgtttgttgtatctg |
21263290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 24842 - 24705
Alignment:
| Q |
138 |
aaccatggagtcaacacttcgttgattgaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaagaagaa---attttggcaaa |
234 |
Q |
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|||||||||||||||||||| ||| ||||||| | ||||| ||| | | ||||||| | ||| ||| |||||||||||||||| ||||||||||| |
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| T |
24842 |
aaccatggagtcaacacttcattggttgaaaatatgaagattggt--tgagcaattctttaaccttccaatggaagagaagaagaataaattttggcaaa |
24745 |
T |
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| Q |
235 |
ctccaaatgatatggaaggatttggtcagatgtttgttgt |
274 |
Q |
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| |||||||||| |||||||||||||||| |||||||| |
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| T |
24744 |
catcaaatgatatacaaggatttggtcagatatttgttgt |
24705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 23960 - 23860
Alignment:
| Q |
174 |
aagataggtattaaagaattcttaagcctaccagtggaagagaagaagaaattttggcaaactccaaatgatatggaaggatttggtcagatgtttgttg |
273 |
Q |
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||||||||| || |||||||| | || | || |||||||||||||||||| ||||||||||||| | ||||| || || |||||||| ||||||||| |
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| T |
23960 |
aagataggtgttcaagaattcatgagtcgtccggtggaagagaagaagaaactttggcaaactccggaagatatagaggggtttggtcaattgtttgttg |
23861 |
T |
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| Q |
274 |
t |
274 |
Q |
| |
|
| |
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|
| T |
23860 |
t |
23860 |
T |
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