View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3919_high_13 (Length: 267)

Name: NF3919_high_13
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3919_high_13
NF3919_high_13
[»] chr1 (5 HSPs)
chr1 (1-251)||(42623840-42624090)
chr1 (166-252)||(52946191-52946278)
chr1 (168-252)||(52935150-52935235)
chr1 (168-252)||(52942785-52942870)
chr1 (168-247)||(11398294-11398374)
[»] chr3 (3 HSPs)
chr3 (168-251)||(25493495-25493579)
chr3 (166-236)||(6302520-6302590)
chr3 (167-247)||(2146118-2146198)
[»] chr6 (3 HSPs)
chr6 (168-243)||(27368781-27368856)
chr6 (168-243)||(27459128-27459203)
chr6 (167-236)||(31600119-31600188)
[»] chr8 (2 HSPs)
chr8 (168-241)||(13881215-13881288)
chr8 (167-233)||(33116833-33116899)
[»] chr4 (1 HSPs)
chr4 (172-236)||(41380458-41380522)
[»] chr7 (4 HSPs)
chr7 (166-247)||(21905936-21906022)
chr7 (168-247)||(47762053-47762133)
chr7 (168-243)||(20290704-20290779)
chr7 (168-216)||(29753389-29753437)
[»] scaffold0036 (1 HSPs)
scaffold0036 (199-242)||(43752-43795)
[»] chr5 (2 HSPs)
chr5 (168-252)||(10548172-10548257)
chr5 (167-247)||(30803774-30803853)
[»] chr2 (1 HSPs)
chr2 (180-236)||(43453160-43453216)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 42623840 - 42624090
Alignment:
Q  1 atttctgttaggccttgttttttgggataaaacataaccattggtaaataggttgctaattgatgctgatcaaatagacagagtttgaagaatttgtgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42623840 atttctgttaggccttgttttttgggataaaacataaccattggtaaataggttgctaattgaagctgatcaaatagacagagtttgaagaatttgtgtt 42623939  T
Q  101 catttggtgttggaaatgatggtttgattgtttctcttgatgtaattgtgatatccataataatcaatgtaatgagtcaaagagttgaaaggggcattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42623940 catttggtgttggaaatgatggtttgattgtttctcttgatgtgattgtgatatccataataatcaatgtaatgagtcaaagagttgaaaggagcattat 42624039  T
Q  201 agaaaatctgaatgtggactcttataaataagagaaagccaaggaaaaaag 251  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||||    
T  42624040 aggaaatgtgaatgtggactcttataaataagagaaagccaaggaaaaaag 42624090  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 52946191 - 52946278
Alignment:
Q  166 aatgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaaaaagt 252  Q
    |||||||||||||  ||||||  |||||||||||| | ||||  |||| ||||| |||||||||| ||| ||||||||||||| ||||    
T  52946191 aatgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagt 52946278  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 52935150 - 52935235
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaaaaagt 252  Q
    ||||||||||| || ||||  |||||||||||| | ||||  |||| ||||| |||||||||| ||| ||||||||||||| ||||    
T  52935150 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagt 52935235  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 52942785 - 52942870
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaaaaagt 252  Q
    ||||||||||| || ||||  |||||||||||| | ||||  |||| ||||| |||||||||| ||| ||||||||||||| ||||    
T  52942785 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagt 52942870  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 11398374 - 11398294
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaa 247  Q
    |||||||||||  ||||||  ||| |||||||| ||||||  |||| ||||| |||||||||| ||| |||||||||||||    
T  11398374 tgtaatgagtcttagagttagaagtggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaa 11398294  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 25493495 - 25493579
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgt-ggactcttataaataagagaaagccaaggaaaaaag 251  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| || | ||||||||||||||||||||||||||| ||||||    
T  25493495 tgtaatgagtcaaagagttgaaaggggcaatatagaaaatgtgaacgtcgaactcttataaataagagaaagccaagggaaaaag 25493579  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 6302520 - 6302590
Alignment:
Q  166 aatgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 236  Q
    ||||||||||||||||||| | ||| ||||| |||||||||| |||||||| |||||||||||||||||||    
T  6302520 aatgtaatgagtcaaagagcttaaaagggcaatatagaaaatatgaatgtgaactcttataaataagagaa 6302590  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 2146118 - 2146198
Alignment:
Q  167 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaaggaaa 247  Q
    |||||||||||||||||||| ||||| ||| |||   |||| |||||||| || ||||||||||||| || || |||||||    
T  2146118 atgtaatgagtcaaagagtttaaaggagcaatatttgaaatatgaatgtgaacgcttataaataagataaggcaaaggaaa 2146198  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 27368781 - 27368856
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaag 243  Q
    |||||||||||||||||||||||| || |||| || |||| |||||||||||||||||||||| ||||||||||||    
T  27368781 tgtaatgagtcaaagagttgaaagaggtattacaggaaatatgaatgtggactcttataaatacgagaaagccaag 27368856  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 27459128 - 27459203
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaag 243  Q
    |||||||||||||||||||||||| || |||| || |||| |||||||||||||||||||||| ||||||||||||    
T  27459128 tgtaatgagtcaaagagttgaaagaggtattacaggaaatatgaatgtggactcttataaatacgagaaagccaag 27459203  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 31600188 - 31600119
Alignment:
Q  167 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 236  Q
    ||||||||||||||||| |||||| ||||| ||||||||||  ||||||||||  |||| ||||||||||    
T  31600188 atgtaatgagtcaaagaattgaaaagggcaatatagaaaataggaatgtggacctttatgaataagagaa 31600119  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 13881215 - 13881288
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagcca 241  Q
    ||||||||||||| ||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  13881215 tgtaatgagtcaaggagttaaaaggagcaatatagaaaatgtgaatgtggactcttataaataagagaaggcca 13881288  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 33116833 - 33116899
Alignment:
Q  167 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataaga 233  Q
    |||||| ||||||||||||||||| || || ||||| |||| |||||||| ||||||||||| ||||    
T  33116833 atgtaacgagtcaaagagttgaaaaggacaatataggaaatatgaatgtgaactcttataaacaaga 33116899  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 41380458 - 41380522
Alignment:
Q  172 atgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 236  Q
    |||||| |||||||||| ||||| | |||||||||| |||||||||||| | |||||||||||||    
T  41380458 atgagttaaagagttgataggggtaatatagaaaatgtgaatgtggactttaataaataagagaa 41380522  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 21905936 - 21906022
Alignment:
Q  166 aatgtaatgagtcaaagagttgaaaggggcattata-----gaaaatctgaatgtggactcttataaataagagaaagccaaggaaa 247  Q
    ||||||||||||||||||| ||||| ||||| ||||     | |||| |||| |||||| |||||||||||||||| ||||||||||    
T  21905936 aatgtaatgagtcaaagagatgaaaagggcaatataatataggaaatatgaaagtggacacttataaataagagaaggccaaggaaa 21906022  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 47762053 - 47762133
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaa 247  Q
    |||||||||||  ||||||  |||||||||||| ||||||  |||| ||||| |||||||||| ||| |||||||||||||    
T  47762053 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaa 47762133  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 20290779 - 20290704
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaag 243  Q
    ||||||||||||||| | ||||| ||  | ||| | |||| ||||| ||||| |||||||||||||||||||||||    
T  20290779 tgtaatgagtcaaagggctgaaaaggataatatggtaaatatgaatatggacccttataaataagagaaagccaag 20290704  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 29753389 - 29753437
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtg 216  Q
    ||||||||||||||||| |||||  |||| |||||||||| ||||||||    
T  29753389 tgtaatgagtcaaagagatgaaaatggcaatatagaaaatatgaatgtg 29753437  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 43795 - 43752
Alignment:
Q  199 atagaaaatctgaatgtggactcttataaataagagaaagccaa 242  Q
    |||| |||| |||||||||||||||||||||||||||| |||||    
T  43795 ataggaaatttgaatgtggactcttataaataagagaaggccaa 43752  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 10548172 - 10548257
Alignment:
Q  168 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaaaaagt 252  Q
    |||||||||||  ||||||  |||||||||||| ||||||  |||| |||||  ||||||||| ||| ||||||||||||| ||||    
T  10548172 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagt 10548257  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 30803853 - 30803774
Alignment:
Q  167 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaaggaaa 247  Q
    ||||||||||||||| || | |||||| || ||||| |||| ||||| |  || |||||||||||||||| ||||||||||    
T  30803853 atgtaatgagtcaaatagcttaaaggg-caatataggaaatttgaatataaacccttataaataagagaatgccaaggaaa 30803774  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 43453216 - 43453160
Alignment:
Q  180 aagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 236  Q
    ||||||| ||| || || ||||| |||| |||||||| |||||||||||||||||||    
T  43453216 aagagttaaaaaggacaatataggaaatgtgaatgtgaactcttataaataagagaa 43453160  T

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