View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_18 (Length: 240)
Name: NF3919_high_18
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 26973761 - 26973540
Alignment:
| Q |
18 |
atgagctacgaagtatccaccaatttttgtcgatgacaaatcttcattggggaacctggttggcaacctttagttgagtctcccctcgtaaccacatttt |
117 |
Q |
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| T |
26973761 |
atgagctacgaagtatccaccaatttttgtcgatgacaaatcttcattggggaacctggttggcaacctttagttgagtctcccctcgtaaccacatttt |
26973662 |
T |
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| Q |
118 |
ttccattcacagggctagaacctgaaaccttgcttaagagaccagggttcaaattcatttggatgaatgtaatgttggtaaataacaagaacaaacattt |
217 |
Q |
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| T |
26973661 |
ttccattcacagggctagaacccgaaaccttgcttaagagaccagggttcaaattcatttggatgaatgtaatgttggtaaataacaagaacaaacattt |
26973562 |
T |
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| Q |
218 |
tgacaaatgaataaatgttatac |
240 |
Q |
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| T |
26973561 |
tgacaaatgaat-aatgttatac |
26973540 |
T |
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